| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006835 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117429 | Gp0125097 | Ga0101935 |
| Sample Name | Combined Assembly of Gp0125097, Gp0125101, Gp0125102 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Shell Corporation |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 95663996 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea | 2 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112 | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| Not Available | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Sediment (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | UK (Newcastle upon Tyne) | |||||||
| Coordinates | Lat. (o) | 54.971158 | Long. (o) | -1.703654 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020363 | Metagenome / Metatranscriptome | 224 | Y |
| F030486 | Metagenome / Metatranscriptome | 185 | Y |
| F064732 | Metagenome / Metatranscriptome | 128 | Y |
| F091072 | Metagenome / Metatranscriptome | 108 | Y |
| F101218 | Metagenome / Metatranscriptome | 102 | Y |
| F102132 | Metagenome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0101935_1016532 | All Organisms → cellular organisms → Archaea | 1152 | Open in IMG/M |
| Ga0101935_1019941 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112 | 1014 | Open in IMG/M |
| Ga0101935_1022296 | All Organisms → cellular organisms → Bacteria | 940 | Open in IMG/M |
| Ga0101935_1034845 | All Organisms → cellular organisms → Bacteria | 684 | Open in IMG/M |
| Ga0101935_1039107 | All Organisms → cellular organisms → Archaea | 629 | Open in IMG/M |
| Ga0101935_1039711 | Not Available | 622 | Open in IMG/M |
| Ga0101935_1041229 | Not Available | 605 | Open in IMG/M |
| Ga0101935_1042163 | Not Available | 596 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0101935_1016532 | Ga0101935_10165322 | F064732 | MEDTEAEAEAALAAAPERCTMPPAQSAERHVKYPLSLMVPGLCTVAIATRSTDQPDPPVHPGRPEDTN* |
| Ga0101935_1019941 | Ga0101935_10199411 | F091072 | MAGTMKETAMPVRGETDEEIKALLKGTDVAWTQYKRDHGTRVTSAKELDAFLDSL* |
| Ga0101935_1022296 | Ga0101935_10222962 | F102132 | MSTKKVVRNLETAITRICEDIKEKKGGSGADKLDSLAKLVNAYSRLIERDNQKKINLEEDGDPMHYTKIASDRTDRSNVIR* |
| Ga0101935_1034845 | Ga0101935_10348452 | F102132 | MNTQTVVKNLESAINRICKDIKDKKGGSGADKLDSLAKLVNAYSRLIERDKEKEKDYDPMEDGDPNYYKKLEANNKDRRGIIR* |
| Ga0101935_1039107 | Ga0101935_10391071 | F101218 | MSKQGPKPALPRVKEPPPLPSLDELIAESRALGWDDLADSMEKLRHLETPEGQKALERREKRLSRL* |
| Ga0101935_1039711 | Ga0101935_10397111 | F030486 | YVALAQSRGGACFCTRGVMQDYDVVCLFSRWQKP* |
| Ga0101935_1041229 | Ga0101935_10412292 | F101218 | MSKRTSKPAPPRVQKPPPLPSIAELIAEARELGEDDIADAFEKIRYLESPSGQRAIERRKRGYD* |
| Ga0101935_1042163 | Ga0101935_10421632 | F020363 | GMWRWRRVAVARVFALVVRCRIMRLLLYSRVGKNRDTRRGSPAGAGAGRTAGYQAILFSQKILAVRKANDIYRPVIASAVNSIFRK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |