| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006707 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0092398 | Ga0031664 |
| Sample Name | Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0362 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 78023140 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | East of Porto Seguro, South Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | -15.83 | Long. (o) | -33.4 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021791 | Metagenome / Metatranscriptome | 217 | Y |
| F025846 | Metagenome / Metatranscriptome | 200 | Y |
| F056539 | Metagenome / Metatranscriptome | 137 | Y |
| F063613 | Metatranscriptome | 129 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0031664_1008064 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii | 635 | Open in IMG/M |
| Ga0031664_1198271 | Not Available | 654 | Open in IMG/M |
| Ga0031664_1241816 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161 | 670 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0031664_1008064 | Ga0031664_10080641 | F063613 | CFMYFILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHA |
| Ga0031664_1176375 | Ga0031664_11763751 | F056539 | SCVMKVQAIVLLALLGLVSCQLALVNPAGRGFSFHDARHAPCGQSPTEVGDRIAWEQGRVYEIEVQVLGAAGGGVIVDRYACVRNGDDENPIEPILPIEGALKVQIPDYDDQIYRLYTRTPSFRCTGDVTMQLVYSAENGQEFFQCQDIILTYSGAASLTMSVFAIIAVVLMVL* |
| Ga0031664_1198271 | Ga0031664_11982713 | F021791 | ADYRIKPHVPPFKQIPANFVKFKPCDYTPQAEYLTC* |
| Ga0031664_1241816 | Ga0031664_12418162 | F025846 | LVSMAHGHVTAMVTVLMAQTKLTVLLHHVKTKVYGIVAMANVFQHHMYVMAQVNSVTQAGLQTVPMAQMKA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |