| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006704 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0092428 | Ga0031694 |
| Sample Name | Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1785 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 79828428 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii | 2 |
| Not Available | 2 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | North Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 9.2 | Long. (o) | -163.5 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007073 | Metagenome / Metatranscriptome | 358 | Y |
| F010686 | Metagenome / Metatranscriptome | 300 | Y |
| F014836 | Metagenome / Metatranscriptome | 259 | Y |
| F061786 | Metagenome / Metatranscriptome | 131 | Y |
| F063613 | Metatranscriptome | 129 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0031694_1004012 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii | 512 | Open in IMG/M |
| Ga0031694_1005175 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii | 636 | Open in IMG/M |
| Ga0031694_1143766 | Not Available | 501 | Open in IMG/M |
| Ga0031694_1186563 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta | 598 | Open in IMG/M |
| Ga0031694_1208526 | Not Available | 803 | Open in IMG/M |
| Ga0031694_1212272 | All Organisms → cellular organisms → Bacteria | 1878 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0031694_1004012 | Ga0031694_10040121 | F063613 | FMYFILLTMNLITSLLKERGSERSASLFVGLALEGRSGLLALVVGGSTDLSLLLESLDGILVLPSDLVRQTTEASEVATRSESQHTEGLRADHTVDLIVRRRNSLEHLQVSESGGTTSGLVRKHSTDGSPEDLRGSAEVERTTSGVDVASLSKEVLVLELVSEVRTRDVD |
| Ga0031694_1005175 | Ga0031694_10051751 | F063613 | FMYFILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHAA |
| Ga0031694_1143766 | Ga0031694_11437661 | F014836 | LMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ* |
| Ga0031694_1186563 | Ga0031694_11865631 | F061786 | YLCETIYPPDNGVSCIPPEKLEKAIKKGEIPPQVQADEEDLDGNMDEVIDNCIREVWQYYDPKGLGSLNKKQTQQFFKDALNLVALRKMCKSKDLFQGRKEGAALDEAFRQVNTSGDGRVTFEQFEEFINAYDLDEAVDFLTGGNSEHQINTQGVQMVDNSSLPSGGGPVKGKIEYRDYGALED* |
| Ga0031694_1208526 | Ga0031694_12085261 | F007073 | MYACPHGNRLYGVYSNAGFFIGRIEGRTVEGTWYEGGRGDRNDWQGSFHIELSADNREFDGYYYRVSQDGAEIRWREERLGAPWPSNPTNVQCLVPGRESVLGKFYNHPGAGRTPAGYALCQDKYDQIYGSFGSPDGFVEGWSVDSSTGFHGYRYDSNGRSGAYILRAVSDNEVRGFYWRGRLARQNIETSVEEVLTRTSFNAHLDECERVGPGFLRRLRGPSNSAGALTFSVLAIVASVLLVLF* |
| Ga0031694_1212272 | Ga0031694_12122724 | F010686 | QATKGAWGMSWHQKAMKGVVDCEMPGEAVKQAMIPGFLNYHMLNT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |