NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006702

3300006702: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1138 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300006702 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0092422 | Ga0031688
Sample NameMetatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1138 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size71829020
Sequencing Scaffolds6
Novel Protein Genes9
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota2
Not Available3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Indian Ocean
CoordinatesLat. (o)-29.63Long. (o)92.98Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000351Metagenome / Metatranscriptome1248Y
F009522Metagenome / Metatranscriptome316Y
F014836Metagenome / Metatranscriptome259Y
F056191Metagenome / Metatranscriptome138Y
F056539Metagenome / Metatranscriptome137Y
F060086Metagenome / Metatranscriptome133Y
F063613Metatranscriptome129N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0031688_1007239All Organisms → cellular organisms → Eukaryota1212Open in IMG/M
Ga0031688_1013957Not Available572Open in IMG/M
Ga0031688_1019312All Organisms → cellular organisms → Eukaryota692Open in IMG/M
Ga0031688_1189700Not Available686Open in IMG/M
Ga0031688_1196474All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii608Open in IMG/M
Ga0031688_1211933Not Available522Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0031688_1007239Ga0031688_10072393F060086RATAGQEDPFELDSNLLLSSGRHGEDRKRQYFLYDHETPLLDDLADLLY*
Ga0031688_1013957Ga0031688_10139571F060086MIIRTTAGQEDPFELDSNLLLSSGRHGEDRKRQYVSTYDHETPLLDDLADLLY*
Ga0031688_1019312Ga0031688_10193122F060086TTAGQEDPFELDSNLLLSSGRHGEDRKRQYVSTYDHETPLHDDLADLLY*
Ga0031688_1157077Ga0031688_11570771F056539KTQLILLFACLISLAAAQLALVNPVGRGFSFGDARHGPCGQSPTEVGNRIAWEQDTVHEIEVQIFGAAGGGVIVDRYSCVLNGDDENPIEPILPIEGALKVEVPDVDDQIYRLYVRTPSFRCTGDVTMQLVYATENGHEFFQCQDIVLTYSGASSLTMSVLAVIAVVLMVL*
Ga0031688_1189700Ga0031688_11897001F014836GMNKLVVVFLLAALSSLALAQCPLERNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031688_1196474Ga0031688_11964741F063613FILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDS
Ga0031688_1206889Ga0031688_12068891F000351QKVLELLGDMLAKGKKEKNAEEVRFSAYTQFCANQDRIKSEAIEKADMRIEELKASIQKAEADAATLAKEIAQLDEDISVAEGNKKAATEVRERENADYLTTHKDYSESIDALERAVATLKKQAFDRSQLLQVTQSSLIPEHAKKVISAFLAQGDELGDDPMDVTAPQANAYEFQSQGIVDMLDKLHDKFEDERTDLEKEESEARHAYEMLMQDLTAEIETKTD
Ga0031688_1211933Ga0031688_12119332F056191VLTAEMSETFPSGGSIHASVKLEGIDGRAPQERVEHV
Ga0031688_1214901Ga0031688_12149011F009522LARFQCNLRSLSLRAMAKAMRAAKAMKAMKRVSKFAKGRMAKSVVFRGTKTATTGGLTKANLMKNKNGKIVSKAMSANGKKAYARIKGWTVAVTKARKALGVKGFLAVKKGTPLYKKAKEFYGK*
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