Sample 3300006701

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300006701

3300006701: Marine microbial communities from the Deep Atlantic Ocean - MP2916 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300006701 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0054934 \| Ga0005519
Sample Name	Marine microbial communities from the Deep Atlantic Ocean - MP2916 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	78878714
Sequencing Scaffolds	1
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Atlantic Ocean
Coordinates	Lat. (^o)	29.5801	Long. (^o)	-23.4114	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007073	Metagenome / Metatranscriptome	358	Y
F056539	Metagenome / Metatranscriptome	137	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005519_1128642	Not Available	869	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005519_1120755	Ga0005519_11207551	F056539	KVQAVLLLALLGLVSCQLALVNPEGRGFSFHDARHGPCGQSPSEPGNRIAWEQNSVREIEVQILGAAGGGVIVDRYSCVRNGDDENPIEPILPIEGALKVKVPDFDDQIYRLYVRTPSFRCTGDVTMQLVYSAENGQEFFQCQDIVLTYSGASALSMSIFAVIALALMIL*
Ga0005519_1128642	Ga0005519_11286421	F007073	KLFVVLVAFCAAALALDAVGEGFAGSPDQVINPANWHGTWTANNRYGGQMYACPKGDRLYGVYSNAGFFIGRIEGRVVEGTWYEGGRGDRNDWQGAFRIELDADNQGFDGFYHRVTQDGTELRWKEERLGAPWPSNPTQDQCLVPGDEPLLGNFYNEAGQGRESAVYSLCKDEFDQIYGSFGSPDGFLEGWSVDDSTGFHGYRYDSNGRSGAYILRAVSDTVVKGFYWRGRLARQNIETSVPETLHRTSYTSRLDDCERVGPGFLRRLRGPTAAAGTLNVSMVVVALVA

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