Sample 3300006664

Overview

Basic Information
IMG/M Taxon OID	3300006664 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117429 \| Gp0125115 \| Ga0101749
Sample Name	T5 (2) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times
Sequencing Status	Permanent Draft
Sequencing Center	Shell Corporation
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	34805719
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	UK (Newcastle upon Tyne)
Coordinates	Lat. (^o)	54.971158	Long. (^o)	-1.703654	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F040697	Metagenome / Metatranscriptome	161	Y
F050777	Metagenome / Metatranscriptome	145	N
F054136	Metagenome	140	Y
F064732	Metagenome / Metatranscriptome	128	Y
F090409	Metagenome	108	Y

Family

Category

Number of Sequences

3D Structure?

F040697

Metagenome / Metatranscriptome

161

F050777

Metagenome / Metatranscriptome

145

F054136

Metagenome

140

F064732

Metagenome / Metatranscriptome

128

F090409

Metagenome

108

Scaffold	Taxonomy	Length	IMG/M Link
Ga0101749_102436	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1622	Open in IMG/M
Ga0101749_102762	All Organisms → cellular organisms → Archaea	1506	Open in IMG/M
Ga0101749_108497	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	814	Open in IMG/M
Ga0101749_110003	Not Available	744	Open in IMG/M
Ga0101749_113582	Not Available	624	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0101749_102436

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii

1622

Open in IMG/M

Ga0101749_102762

All Organisms → cellular organisms → Archaea

1506

Open in IMG/M

Ga0101749_108497

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.

814

Open in IMG/M

Ga0101749_110003

Not Available

744

Open in IMG/M

Ga0101749_113582

Not Available

624

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0101749_102436	Ga0101749_1024362	F064732	MEAEAEAATAAARERCTMPLAQSAERHVRFPSSPMAPGQFIAATATRSIDQPDHPEDTKLGIHP*
Ga0101749_102762	Ga0101749_1027621	F050777	MDDDIVYEKAVEILNPGRLYFAIKAMRKSPVKISFDMGDLNLTSGAASSLVSIEGKLPEEVQAMQWLVPLEDLKILQDLIPPDTYYWENRAIILEWQCDLVVDSTIDEKSPLESLDQEEEYRDQLLVTNREYRQLQMELDDCNAHVPQVLFSIYPDSLNFAVNCSEHDEIVGTMIQMRSQKEE*
Ga0101749_108497	Ga0101749_1084972	F040697	MKLIEKLVDDNVMDDILKEAADGYGDLIAAALVHKVSVKSLQTRVTELRDLRAAWIS*
Ga0101749_110003	Ga0101749_1100031	F054136	MIENKAQLLADLAYVGSKVQAKTNVYIFAGAAFMWHGLKDATKDIDICCSYEEADRIVSELRMFGNMESVTGINDVHFLRITFKSFALQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPDVKTLIMIRDRQIQALYNEWKKLQGEKC
Ga0101749_113582	Ga0101749_1135822	F090409	MKKEFAGILQTSFGMTDSVHFSLEMPGSLIGDANQFLEGARRKRVLVTVEIQEVAD*

Scaffold ID

Protein ID

Family

Sequence

Ga0101749_102436

Ga0101749_1024362

F064732

MEAEAEAATAAARERCTMPLAQSAERHVRFPSSPMAPGQFIAATATRSIDQPDHPEDTKLGIHP*

Ga0101749_102762

Ga0101749_1027621

F050777

MDDDIVYEKAVEILNPGRLYFAIKAMRKSPVKISFDMGDLNLTSGAASSLVSIEGKLPEEVQAMQWLVPLEDLKILQDLIPPDTYYWENRAIILEWQCDLVVDSTIDEKSPLESLDQEEEYRDQLLVTNREYRQLQMELDDCNAHVPQVLFSIYPDSLNFAVNCSEHDEIVGTMIQMRSQKEE*

Ga0101749_108497

Ga0101749_1084972

F040697

MKLIEKLVDDNVMDDILKEAADGYGDLIAAALVHKVSVKSLQTRVTELRDLRAAWIS*

Ga0101749_110003

Ga0101749_1100031

F054136

MIENKAQLLADLAYVGSKVQAKTNVYIFAGAAFMWHGLKDATKDIDICCSYEEADRIVSELRMFGNMESVTGINDVHFLRITFKSFALQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPDVKTLIMIRDRQIQALYNEWKKLQGEKC

Ga0101749_113582

Ga0101749_1135822

F090409

MKKEFAGILQTSFGMTDSVHFSLEMPGSLIGDANQFLEGARRKRVLVTVEIQEVAD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006664: T5 (2) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences