Sample 3300006650

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300006650

3300006650: T5 (1) (Live) Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times

Overview

Basic Information
IMG/M Taxon OID	3300006650 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117429 \| Gp0125094 \| Ga0101722
Sample Name	T5 (1) (Live) Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times
Sequencing Status	Permanent Draft
Sequencing Center	Shell Corporation
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	46592645
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	UK (Newcastle upon Tyne)
Coordinates	Lat. (^o)	54.971158	Long. (^o)	-1.703654	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040697	Metagenome / Metatranscriptome	161	Y
F047387	Metagenome / Metatranscriptome	150	Y
F050029	Metagenome / Metatranscriptome	146	Y
F050777	Metagenome / Metatranscriptome	145	N
F098317	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0101722_103478	Not Available	1831	Open in IMG/M
Ga0101722_105220	All Organisms → cellular organisms → Archaea	1451	Open in IMG/M
Ga0101722_116073	Not Available	717	Open in IMG/M
Ga0101722_120334	Not Available	613	Open in IMG/M
Ga0101722_120851	Not Available	602	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101722_103478	Ga0101722_1034782	F040697	MKLIEKLVDDNVMDDILKEAADGYGDLIAAALVHKVSVKCLQTRVTQLRDLRAAWIS*
Ga0101722_105220	Ga0101722_1052203	F047387	MHAIDILTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*
Ga0101722_116073	Ga0101722_1160732	F098317	MARALRLGLTLSEEDAKVFLQSEEAYAVTPQHKQQLREAQRIYQSHPIKF*
Ga0101722_120334	Ga0101722_1203341	F050777	EKAVEILNPGRLYFALKAMRSSPVKISFDMGDLNLTSGPVSSLISIEGNLPEEVLAMQWLVPLGDLKILQDLIPPDTYYWENRALVLEWQCDLVVDSTIDEKNPLESIEQEEEYRDQLLVSNREYRKLQMALDDCNSHIPQVLFSIYPDRLNFDTFPQIFHAGAGVFFSLLAGGIITGSIIGFIYFNLFLYFLRKRRMKSDHIT
Ga0101722_120851	Ga0101722_1208513	F050029	MATIIIHWKDKDIPPMELKAAAYKGADSSIIKITSNGKDYWFNWGECWFLETTSTE*

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