NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006433

3300006433: T18 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times



Overview

Basic Information
IMG/M Taxon OID3300006433 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117429 | Gp0123961 | Ga0100129
Sample NameT18 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times
Sequencing StatusPermanent Draft
Sequencing CenterShell Corporation
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size35285055
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix2
All Organisms → cellular organisms → Archaea1
Not Available3
All Organisms → cellular organisms → Bacteria3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSyntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationUK (Newcastle upon Tyne)
CoordinatesLat. (o)54.971158Long. (o)-1.703654Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050777Metagenome / Metatranscriptome145N
F054136Metagenome140Y
F064732Metagenome / Metatranscriptome128Y
F080090Metagenome / Metatranscriptome115Y
F090409Metagenome108Y
F098317Metagenome / Metatranscriptome104Y
F102132Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0100129_101341All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix2642Open in IMG/M
Ga0100129_102534All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix1694Open in IMG/M
Ga0100129_102912All Organisms → cellular organisms → Archaea1547Open in IMG/M
Ga0100129_106239Not Available957Open in IMG/M
Ga0100129_106870Not Available905Open in IMG/M
Ga0100129_110938All Organisms → cellular organisms → Bacteria694Open in IMG/M
Ga0100129_114834All Organisms → cellular organisms → Bacteria587Open in IMG/M
Ga0100129_117906Not Available526Open in IMG/M
Ga0100129_118943All Organisms → cellular organisms → Bacteria509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0100129_101341Ga0100129_1013413F054136MIENKAQLLADLAYVGSKVQAKTNVYIFAGAAFMWHGLKDATKDIDICCSYEEADRIVSELRMFGNMESVTGINDVHFLRIIFKSFSLQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPDVKTLIMIRDRQIQALYNEWKKLQGEKCV*
Ga0100129_102534Ga0100129_1025343F090409LAKGSSNGGDRMKKEFAGILQTSFGMTDSVHFSLEMPGSLIGDANQFLEGARRKRVLVTIETQEVAD*
Ga0100129_102912Ga0100129_1029122F064732MEAAAEAALAAAPEKCTMPPAQSAERHVKFPSSPMDPGPYIAAIATRSTSQQDPVPPGHPEDTNYLIVI*
Ga0100129_106239Ga0100129_1062391F054136GAAFMWHGLKDATKDIDICCSYEEADRIVSALRMFGNMESVTGINDVHFLRIIFKSFGLQIFIKGIWMGDEYQLLEAAPCDSLTFDGVTFLIPNVKTLIMIRDRQIQALYKEWKKLKGEKCT*
Ga0100129_106870Ga0100129_1068701F050777MEDDIIYEKAVEILNPGRLYFALKAMRSSPVKISFDMGDLNLTSGPVSSLISIEGDLPEEVLAMQWLVSLEDLKILQDLIPPDTYYWENRALVLEWQCDLVVDSTIDEKNPLESIEQEEEYRDQLLVSNREYRKLQMALDDCNSHIPQVLFSIYPDRLNFAVNCSQHDEIVGTMIQMKGQKEA*
Ga0100129_110938Ga0100129_1109382F102132METQKVVKNLESAINRICKDIKDKKGGSGADKLDSLAKLVNAYSRLIERDKDKEKEYDPMEDGDPTYYKKLEANNKDRRGIIR*
Ga0100129_114834Ga0100129_1148342F102132MSTTKVIKNLERAINRICDDIKEKKGGSGSDKLNSLSKLVNSYSRLIERSKNNEVDPLMDGDPEYYSSLQKQKDRSGVIR*
Ga0100129_117906Ga0100129_1179062F098317ALRLGLTLSEEDAKVFLQSEEAYAVKPQHKQQLREAQRIYQSHPIKF*
Ga0100129_118943Ga0100129_1189432F080090MSEQWSEPLRMDKKLSNADSWREVHEEDQAALRPGLQDIS
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