Sample 3300006362

Basic Information
IMG/M Taxon OID	3300006362 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114433 \| Gp0116203 \| Ga0075508
Sample Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_RNA1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_RNA1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	15245455
Sequencing Scaffolds	11
Novel Protein Genes	20
Associated Families	18

Dataset Contents

Total Genome Size

15245455

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
Not Available	6
All Organisms → cellular organisms → Eukaryota → Sar	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

Not Available

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium

Ecosystem Assignment (GOLD)
Name	Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Ecosystem Assignment (GOLD)

Name

Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal water body → coastal sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Delaware River, USA
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Delaware River, USA

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000040	Metagenome / Metatranscriptome	3998	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000100	Metagenome / Metatranscriptome	2281	Y
F000244	Metatranscriptome	1468	Y
F000953	Metagenome / Metatranscriptome	822	Y
F001293	Metagenome / Metatranscriptome	729	Y
F006791	Metatranscriptome	364	Y
F008818	Metatranscriptome	327	Y
F018727	Metatranscriptome	233	Y
F023864	Metatranscriptome	208	Y
F027881	Metagenome / Metatranscriptome	193	Y
F030772	Metagenome / Metatranscriptome	184	Y
F038261	Metagenome / Metatranscriptome	166	N
F052618	Metatranscriptome	142	Y
F080124	Metatranscriptome	115	Y
F084274	Metatranscriptome	112	Y
F085750	Metatranscriptome	111	N
F105263	Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0075508_108743	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	662	Open in IMG/M
Ga0075508_119971	Not Available	580	Open in IMG/M
Ga0075508_144785	Not Available	505	Open in IMG/M
Ga0075508_146036	All Organisms → cellular organisms → Eukaryota → Sar	605	Open in IMG/M
Ga0075508_146826	Not Available	654	Open in IMG/M
Ga0075508_146936	All Organisms → cellular organisms → Eukaryota → Sar	558	Open in IMG/M
Ga0075508_149036	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	592	Open in IMG/M
Ga0075508_149842	Not Available	807	Open in IMG/M
Ga0075508_149991	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	550	Open in IMG/M
Ga0075508_150906	Not Available	517	Open in IMG/M
Ga0075508_154509	Not Available	557	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0075508_100490	Ga0075508_1004901	F000075	KLTLQMKFALAIATVAANQYDFMSEDELLSQLASNLSSAQMSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0075508_102211	Ga0075508_1022111	F000075	GVQTNSLQMKFAAALIATVAANRYENMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0075508_108743	Ga0075508_1087431	F001293	LIDKPMIPNSFICKLINVQAREKENNEKKIRNEDEISKLTKAPPKDTAALDKRSVLAKVNSQESGR*
Ga0075508_119971	Ga0075508_1199711	F023864	SSAEDMQLVAADAQWTGTQTEWPDCMTIPTFPGKCPVEEHPGACFRTDGKMWSCWADWEELDDDDCQSMTLNDEIVGFEGACKYELWGKSMKQSDVPDCFDVDKCLAECHPITDKWGACYLEDDTGVDKAERCMCALKADAPGGDRLFLDTLLQYGCKTKQIGYMDKAYEELCLFPDDGPQPVYKCDSVPTFN
Ga0075508_121344	Ga0075508_1213441	F085750	VENLDFQKTIADQTVTIEILHKAMDRLAQFYDSVEFLQRHKQTPPVAQAEYKPNAGAGGVISMIEKLIYDAKDLMAKAKESEGEAQSAYETLVADTNDSVDKLTKEVATKTEEVAKAKKDLINTQSDLEDTIEELEGLAKYNADLHAECDYVMKNFDARQKARGDEITSLQEAKQILEGANLGF*
Ga0075508_129941	Ga0075508_1299411	F000244	VTPVQKVIEMMNGMLEKGKKEKHDEQVQFAAYKQFCDDTTVEKQRAIEEAEESIEVLKADIEKAVSDAAALTKKIAKLDEDIATWKGDIKATTKVREIEKADYDTTHKDYSESIDALERAIAVLKKQDHDRAQAALLQVSSGSLIPAEAKRTIEAFLAEDPAEGLAVSAP
Ga0075508_143811	Ga0075508_1438111	F084274	ALLNPQLSHNHDLGSTMRTLEQHLDVRSAAKVVAHRGLPLDVQTLVQRVGSGTSVDVGGGEFSEESLAKARKALNDLIEKAWYELDEKIIKCKGFEDMNRENYGQVTRDIARLIAQINDLERIEAEAIEGISSKEAEITGVEGTLEQETASYNADYASNSAELTIRQNDLDVFQFILTFTKCEDATSLSQVKLCQTPKGQATLFFQDRSTNEKYQHLLTPTVKREVSKMLGSFM
Ga0075508_144785	Ga0075508_1447851	F018727	PPSLTSAVMVITDGKPSFNFMTTQMVEQLEDKGIQRYFLVVCDAALTDAPYKMMKEWASQPWETNLVHVQGGLAVLDADTDIWADKALVKFCPMAHSPSELEWEEMNYGYAHVKDGGYCGELLDDNLLTSDVQDVEQCAALVSGAGGQSFIFGVSFANGKCIMGDPAV
Ga0075508_146036	Ga0075508_1460361	F008818	QTSTASVLRQLSISLDMSSVDREMLTGFLAGKNGYSPASGEIVGILKTMHDEMSADLKSATDDENNAIAAFSSLVAAKEKEVNALSRAIESKMTRVGDLGVKIAQMKNDLEDTIEDQGESQKFLKDLAGNCEKKKKEWATYKEMQGQEMLALADTIKVLNDDDALELFKKTLPGSASSLMQVKASNMAIRKKVISHLQKLS
Ga0075508_146395	Ga0075508_1463951	F000040	PVASFLCNWITMKSVVAIATLGVAAHAITPVQKVIEMMNGMLEQGKKEKNEEQVQFAAYKQFCDDTSVEKKRSITEAEETIEVLKADIEKYTADAAALTEHIAKLDDDISVWEGDVKAATKVREIEKSDYDTTHKDYSESIDALERAIGVLKKQDHDRKQASLLQLSSLSLIPEDAKRTIESFLAQDPDEGLAVSAPE
Ga0075508_146826	Ga0075508_1468261	F052618	SSWPKIPTSGHLKPTINTMKAVLFAVTVAQAAPIDKVISMISELEQKVIGEGEDAHKVYAEKAEWCEDTSKDVMYEIKTGKSNVESLKATIAKESSNIDAQTASIEELAGAISMDEADLKAATEIREREEGVFKAKEADLVETVDILERAIGIIEKEMKGGSFAQVSKNAKNMVEVFRSMVSAQSISNMEGEKLTALIQANQQDSDDEAGAPAAAVY
Ga0075508_146936	Ga0075508_1469361	F006791	LHHIFKTLAENIKSSKAAIAEAQTQMKRRSETREAENEDYQTTVQDQRLTQMILQKAIDRMSQVYALLQAPGAPHIQTSGTATDPGNGPAKFKDNAQENAGGKKVLAMLEDVMKDSRDMENEAINAEESAQNAYENFMKDSNKMIISTTKMINDMTEAKSKAKADLIMAKTDFKQTMSELEGLNNE
Ga0075508_149036	Ga0075508_1490361	F000953	PVPKYYTPFDHEATYYERTTPARFSADTDDIFMRSMIEQYALEERTKVVEHADGLKTGGEPSGKFWMNQASAMAAAKEVLTTHKGLTGKQLEDYIATYFAKSWGHFDVNQTGFIEVIKMPQFMRFLCSDQYMSLGESG*
Ga0075508_149267	Ga0075508_1492671	F105263	NVAKVEAVKDGASPEEASLACNPDMVPDCALLHDKLSLMWGEFKDKVDELTYEMMKNEYQFAELKTNLNSQITMLTAKKATLNQLLAEARGNLANDNEELKQKYTQKAELDDQYVKYMAACKKRIDWIFYQDMCAIKIVRNAVMENSTVCPAADIVDCQMGDWVPEECSVSCDDSCSPQEPYKCGGWQMMKRE
Ga0075508_149842	Ga0075508_1498421	F038261	LGALARRNAGLLRAASGVQFQAVRAASTATVWGHDAWRYEKSAFKEWVKASNVQGTPEQHQMYAFLATNFGDADVDKDGWIDDEEFDRLLESVAALPRRFGLAPSWKAEYGTAEKRKAARKAMFDAIDGADGFKPRGKIAMGQFITWAQKHVGGKAPTLEKMQGDVALRHIEDHTKEDYLAFLDKAVNDKKSGASASFYNYLLTIFVEADEGCKGRINYDEFIKLIDIAAKTPRAFGLAPDSQDEAARKAMF
Ga0075508_149991	Ga0075508_1499911	F030772	YIDHDVMHGATFPPYEWQRNITHIFSDFFSLPWEEFVLEHNRHHASTVDLLNQGEFGWDPEEFQYWMLEWTWRHKKYPFPIHPFGLLITGAMLPVIHFFGLNDTGALFALEWYFHFPDAGAGGKCNKEFWKKWFPRRVKHTLTVASLWACIWLLGTWPLGRPLNEGWRFMLTVSFCARIGFS
Ga0075508_150906	Ga0075508_1509062	F027881	MSLTVARSERVRGVLTHAVERGILVNLSGVRVSNAL*
Ga0075508_150912	Ga0075508_1509121	F000100	LERAIAVLKKQAHDRKQASLIQLKNLKLIPADAKNVIDAFLQQDPDEGLAVSAPEANAYESQSGGIIEMLEKLLDKFIEERTTLEKEEMNSKHAYDMLMQDLNAQVGQATTDRGEKAEFKAQTLQSKADAEGDVKDTTSTRDADSKYLADLTATCEQKASDFESRQQLRAE
Ga0075508_152351	Ga0075508_1523511	F000040	MKAAIVVLLALASTQSASAAAVTPVQKVIQLMEGMMTKGKEEKHAEQVQFAAYKQFCDDTTVEKTRAIKEAEETIEILKADIQEYTATAAQLGKEIAAHDEDISVWTGDMKAATKVREMEKADYDAMHKDYSESVDALTRAIAVLKKQAYDRKQAGSLVQVSALNSLSLIPKEAKQAIDAFLQQDPDEGLAVSAP
Ga0075508_154509	Ga0075508_1545091	F080124	ISSCCQMKVFFALPLVSAVDDSSTLLSLKVQTTLETGVDHLLDAVGSRNVTQMSSLLQNLVEETISADAPYQLDGDVTAALEVIKSELLGDIRNALKESHCYDQSDLHNQIYCFKGCEDRRQVGGESCGERCDGNAHKECRFDLLGLYKKHINACRALDAWVLKFTQEDCPVPQSKCCLLSHNTW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006362: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_RNA1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences