NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006233

3300006233: Marine sediment microbial communities, 0.3 km from oil contamination, elevated hydrocarbon, Gulf of Mexico ? BC331



Overview

Basic Information
IMG/M Taxon OID3300006233 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0116840 | Gp0121737 | Ga0082393
Sample NameMarine sediment microbial communities, 0.3 km from oil contamination, elevated hydrocarbon, Gulf of Mexico ? BC331
Sequencing StatusPermanent Draft
Sequencing CenterYale Center for Genome Analysis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size33148937
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biomemarine benthic featuremarine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationGulf of Mexico
CoordinatesLat. (o)28.3Long. (o)-88.2Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030135Metagenome / Metatranscriptome186Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0082393_115924Not Available763Open in IMG/M
Ga0082393_126180Not Available588Open in IMG/M
Ga0082393_126183Not Available579Open in IMG/M
Ga0082393_130134Not Available737Open in IMG/M
Ga0082393_130135Not Available743Open in IMG/M
Ga0082393_130136Not Available743Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0082393_115924Ga0082393_1159242F030135RISPEGLKDREELATLSSFTDIGHSTFVGRQFPDAILPGEEAIDLVAGPLN*
Ga0082393_126180Ga0082393_1261801F030135RISPEGLKDREELATLSSFTDILHSTFVGRQFPDAILPGREAIDLVAGPLN*
Ga0082393_126183Ga0082393_1261831F030135SEGLKYREELATLSSFADIWHSTFVGCQLPDAILPGREAIDLVAGPLN*
Ga0082393_130134Ga0082393_1301344F030135ISPKGLKDREELATLSSFTDIWHSAVAGCQFPDAILPGKEAFDLVAGPLS*
Ga0082393_130135Ga0082393_1301351F030135PRISPEGLKDREELATLSSFTDIWHSTFAGCQFPDAILPGREAFDLVAGPLN*
Ga0082393_130136Ga0082393_1301361F030135PRISPEGLKDREELATLSSFTDIWHSTFAGCQFPDAILPGTEAIDLVAGPLS*

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