NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005906

3300005906: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL08



Overview

Basic Information
IMG/M Taxon OID3300005906 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114820 | Gp0116312 | Ga0075127
Sample NameSaline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL08
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size6515157
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomesaline lakelake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationDeep Lake, Antarctica
CoordinatesLat. (o)-68.5602Long. (o)78.1968Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003128Metagenome506Y
F027696Metagenome194N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0075127_10200All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales2203Open in IMG/M
Ga0075127_10617All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales936Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0075127_10200Ga0075127_102005F003128MQIEVSASDIKSGKKADDRGRVTLGSEHAGKTVTVAVLEVKDEDDE*
Ga0075127_10617Ga0075127_106171F027696MSTTKLSTVASNLDICELDDERVIDFDIAANTDYEIQSCVIVDEDDRVVEAVVRFGRVEERPELGIGKSILYPAWANMVSEATNVEAVEGDLSDFSHIVPHLRVRRENVEKYGLETLSLDAFVTVVAELADLTEDILRGDDKTIDSQIDAYL*

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