Sample 3300005491

3300005491: Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Formaldehyde enrichment

Overview

Basic Information
IMG/M Taxon OID	3300005491 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0055738 \| Gp0050990 \| Ga0074212
Sample Name	Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Formaldehyde enrichment
Sequencing Status	Finished
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	57559745
Sequencing Scaffolds	52
Novel Protein Genes	62
Associated Families	60

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
Not Available	23
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Aquihabitans → unclassified Aquihabitans → Aquihabitans sp. Kera 3	1
All Organisms → cellular organisms → Bacteria	10
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Nitrospirae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaB.Bin001	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Sediment Methylotrophic Communities From Lake Washington, Seattle, Washington, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment → Sediment Methylotrophic Communities From Lake Washington, Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	Lake Washington, Seattle, Washington, USA
Coordinates	Lat. (^o)	47.63458	Long. (^o)	-122.26655	Alt. (m)	N/A	Depth (m)	63
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000318	Metagenome / Metatranscriptome	1309	Y
F001817	Metagenome / Metatranscriptome	630	Y
F001883	Metagenome / Metatranscriptome	622	Y
F002429	Metagenome / Metatranscriptome	560	Y
F004137	Metagenome / Metatranscriptome	451	Y
F004953	Metagenome / Metatranscriptome	417	Y
F005672	Metagenome	393	Y
F007558	Metagenome / Metatranscriptome	349	Y
F007886	Metagenome / Metatranscriptome	343	Y
F009267	Metagenome / Metatranscriptome	320	N
F010035	Metagenome / Metatranscriptome	309	Y
F018151	Metagenome	236	Y
F020989	Metagenome	221	Y
F021176	Metagenome / Metatranscriptome	220	Y
F021332	Metagenome	219	Y
F022541	Metagenome	214	Y
F023723	Metagenome / Metatranscriptome	209	Y
F023890	Metagenome / Metatranscriptome	208	Y
F029409	Metagenome	188	Y
F029667	Metagenome / Metatranscriptome	187	Y
F030735	Metagenome / Metatranscriptome	184	Y
F030791	Metagenome	184	Y
F031716	Metagenome	182	Y
F032703	Metagenome / Metatranscriptome	179	Y
F034202	Metagenome / Metatranscriptome	175	Y
F035667	Metagenome	171	N
F037096	Metagenome / Metatranscriptome	168	Y
F040291	Metagenome	162	Y
F041837	Metagenome / Metatranscriptome	159	Y
F043354	Metagenome / Metatranscriptome	156	Y
F046458	Metagenome / Metatranscriptome	151	Y
F047453	Metagenome / Metatranscriptome	149	Y
F049737	Metagenome / Metatranscriptome	146	Y
F053753	Metagenome / Metatranscriptome	140	Y
F058261	Metagenome	135	Y
F060856	Metagenome / Metatranscriptome	132	Y
F063373	Metagenome	129	N
F072884	Metagenome	121	Y
F073864	Metagenome	120	Y
F074780	Metagenome	119	Y
F075404	Metagenome	119	Y
F076001	Metagenome	118	N
F076272	Metagenome / Metatranscriptome	118	Y
F076869	Metagenome / Metatranscriptome	117	N
F076870	Metagenome / Metatranscriptome	117	N
F078120	Metagenome	116	Y
F078294	Metagenome	116	Y
F082695	Metagenome / Metatranscriptome	113	N
F084413	Metagenome / Metatranscriptome	112	Y
F085346	Metagenome	111	Y
F088340	Metagenome	109	N
F089074	Metagenome / Metatranscriptome	109	Y
F091051	Metagenome	108	Y
F092033	Metagenome / Metatranscriptome	107	N
F096527	Metagenome / Metatranscriptome	104	N
F101097	Metagenome / Metatranscriptome	102	Y
F102636	Metagenome	101	Y
F102951	Metagenome / Metatranscriptome	101	Y
F103861	Metagenome / Metatranscriptome	101	Y
F105254	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0074212_100425	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1646	Open in IMG/M
Ga0074212_100471	All Organisms → cellular organisms → Bacteria → Proteobacteria	1501	Open in IMG/M
Ga0074212_100971	Not Available	794	Open in IMG/M
Ga0074212_101051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Aquihabitans → unclassified Aquihabitans → Aquihabitans sp. Kera 3	893	Open in IMG/M
Ga0074212_101972	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
Ga0074212_104513	All Organisms → cellular organisms → Bacteria → Proteobacteria	752	Open in IMG/M
Ga0074212_104667	Not Available	806	Open in IMG/M
Ga0074212_104892	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	805	Open in IMG/M
Ga0074212_104995	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
Ga0074212_105874	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
Ga0074212_107032	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
Ga0074212_108274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	821	Open in IMG/M
Ga0074212_110524	Not Available	825	Open in IMG/M
Ga0074212_112898	Not Available	865	Open in IMG/M
Ga0074212_113896	Not Available	893	Open in IMG/M
Ga0074212_115435	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	867	Open in IMG/M
Ga0074212_115448	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
Ga0074212_116169	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	873	Open in IMG/M
Ga0074212_116440	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
Ga0074212_117658	Not Available	933	Open in IMG/M
Ga0074212_117659	Not Available	906	Open in IMG/M
Ga0074212_120418	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
Ga0074212_123257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	887	Open in IMG/M
Ga0074212_123381	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	919	Open in IMG/M
Ga0074212_125072	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	917	Open in IMG/M
Ga0074212_126501	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	854	Open in IMG/M
Ga0074212_126619	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
Ga0074212_126735	Not Available	881	Open in IMG/M
Ga0074212_131587	Not Available	610	Open in IMG/M
Ga0074212_131783	Not Available	732	Open in IMG/M
Ga0074212_134518	Not Available	787	Open in IMG/M
Ga0074212_137171	Not Available	673	Open in IMG/M
Ga0074212_137540	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
Ga0074212_141024	Not Available	887	Open in IMG/M
Ga0074212_142198	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	752	Open in IMG/M
Ga0074212_143192	All Organisms → cellular organisms → Bacteria → Nitrospirae	811	Open in IMG/M
Ga0074212_144932	Not Available	890	Open in IMG/M
Ga0074212_145055	Not Available	891	Open in IMG/M
Ga0074212_146720	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaB.Bin001	884	Open in IMG/M
Ga0074212_150478	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
Ga0074212_150743	Not Available	820	Open in IMG/M
Ga0074212_150797	Not Available	876	Open in IMG/M
Ga0074212_152128	All Organisms → cellular organisms → Bacteria → Acidobacteria	848	Open in IMG/M
Ga0074212_153796	Not Available	844	Open in IMG/M
Ga0074212_157399	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium	786	Open in IMG/M
Ga0074212_159452	Not Available	808	Open in IMG/M
Ga0074212_162022	Not Available	897	Open in IMG/M
Ga0074212_164344	Not Available	876	Open in IMG/M
Ga0074212_164512	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	855	Open in IMG/M
Ga0074212_164995	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	886	Open in IMG/M
Ga0074212_165399	Not Available	825	Open in IMG/M
Ga0074212_169754	Not Available	898	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074212_100425	Ga0074212_1004252	F082695	LFVLLSYESQTGDESDVARWAHKLMNRSVANRTITKPEAMCELGQLPMVICSESIETVSITGQTRCSIDTTTSTILSQYKNRPNTQERLSLHEFYHAKTNNHSMATAANHREFVPHYVGGRGQPVYPVTDTKQSISYARSEILKHMPWSQKNPMPNECDWVAIFKEFLQDPSCPAGVKLGFERAKLRYELRRKGIQEVFQPDTEHSNATDDLDDDEIGDVIALTESLGYTEDELDKMEENGFCIGRDYDWGRRVYTVSNNCII*
Ga0074212_100471	Ga0074212_1004712	F007558	MQMIAELKMLLLEILESAFQNGDVHATQQMGVNMSNAVKREGVVIIQNQNVEVLARIMPSMVKTLKLCDAMESSWRSQGAITIDPQQPQLPPPEDEDDADPIEACCSWLYENHTNWQDMQDLMKARYLEYVIGRFKTKTEAAKWLGVGSTYLCKLSKTTMNN*
Ga0074212_100971	Ga0074212_1009712	F001883	MAYKKTGEFNVLYPTRRRMANILKRILRNDIVENNGTLVESIRINAKVTGFGSLEIEIVAMYYFIFLNNGAFLWNGGVITPRDYVNTFTRELANAGITNEIYGQYVEWISQNYPILEVAEILESDQRLTYTFYALDPPAGFTPNYPLTV*
Ga0074212_101051	Ga0074212_1010512	F076272	MRFTQGIRVRCGEADTLVHLLAEWDQLQSATDVMGYIGTRLLADREEPGCFLIMAEFAEVDGDVTAAVEAERNNQRAETEQWVAKLRSLVEGEPEWVHFDELYRTGITGNLKTG*
Ga0074212_101972	Ga0074212_1019722	F004137	MTAGWILLGVVGWTLGVVFVLLLFRMAGDQDRAARHQQKRCFPTADVTITRMRG*
Ga0074212_102314	Ga0074212_1023143	F092033	VQLTGKNFEPDWGLYNGSIGTVKEIVFKEHENPLDRFQPEYVIVDFPQYCGPHWMASEKTWVPIPVVEMNCSRWCCQLQYIPLTLAYAKTCHTFQGQTVGKKHPISCIIVQPGTRDFEGKCPGLFYVFLSRATDIGSPGDRSTSAIFFEGPDMTNDRITDLTHSLTTKREYIKVTKRRIWTNHLQNNLINIEISKQQKSSLINWCERTKISERDVQRVIQDPRWRKSDLLNH*
Ga0074212_104513	Ga0074212_1045132	F032703	MIRILHRHRQFLASAALGLWAFAVFVGIANACSWDGVTAVPHQPTVAAHAADDVVDQGMAADCDEFCSNDIPLLRVLQRVQEQPAGHPLVVATHHDLGVLPISAPALRLARTARPSRTVPFSLRIVRLTLXAAVL
Ga0074212_104667	Ga0074212_1046672	F063373	MTTMCSYSQMVKTKHGWDYYSKTYLFQEYGQKATYFPQPSKLSYNEDDNGLMIIYTNGQRETYHLTQVDPIFKSETDAGHKYDVHEMLNYTTYTGLYLQII
Ga0074212_104892	Ga0074212_1048922	F023723	MAERKTDPPASGKPSPQEAPRSARKLKPEQYELKIRWEKARQVLDVSPTGVRFDFDTPLKVGTKYPISLTAPGVSFSTTLEVSRCQLTVEPPSGRFFRVTGRFFPYVD*
Ga0074212_104995	Ga0074212_1049951	F091051	FVPVKIEGEVLSGEYVLSWAGGRSLKIPLQFELDSLRRLLTVLEGVR*
Ga0074212_105874	Ga0074212_1058742	F005672	MTHSQHWLDHIAATAAEWGLCKPKDYGEDERKRPLAAVATDLNGRLKQCCKSADSPSAAMIAMRSHLALFARYGLPNPKATQLVRDMTMQAFTPKRR*
Ga0074212_107032	Ga0074212_1070321	F084413	MLSGKDDAGESRMGEISMSGLTRERGAAVIGLRASHSVLSSL
Ga0074212_108274	Ga0074212_1082741	F010035	SDANHRYMTDRAVRDQMVAKGWLAEGDGPDLVVMCAPQ*
Ga0074212_110524	Ga0074212_1105241	F009267	MKKNKDNELEKDDEILRIQAMEDGPKIVNGRTLRPITALTISWMQRNEVFSGEMDPVWKAAAFTFLHSEPMSTIRGAVNDRAIFINAVDSWIEKNMKHHHETSDMSDEMGKAFDLYNSASPASQPGESSGSGN*
Ga0074212_110524	Ga0074212_1105242	F035667	MEELPFAAGLQLLHADDYVNGRHSAWANNNASVDVDALANIEATLAKYGKV*
Ga0074212_112884	Ga0074212_1128842	F075404	VSKRAVLAILALTTSALIFAATARASCLPATAAEQRTRADVIFDGVALDGPTATGEQRFRVTRYRKGSGPAIVRVQTGTVRRADGTGSTTSVAIVVKRGERWRIFARGAAWKILQTNVCDGSRRL*
Ga0074212_112898	Ga0074212_1128981	F021176	MGLTNDVIAAWALALVGPAVLFVTALFLRQVRPPQSEPARTAERIVRWYAAHPQLALWVLLLLLPLSAFILGSVGLLRTWGDNPQLRYYAWRALAAIPAHWPAVSIGGATLLSAGVLAMITPHLMAGQDHDRRSMSH*
Ga0074212_113896	Ga0074212_1138962	F004953	MSEKSMMLVEATWQDKKTFRLIPITESCPYVECIFDPETKVFVVISKIRKTSLHMLPKLDEYGQPLTGTKGTKQERHKIEVFQEFYVEDASAIEEIIKLMSINSKFDYKKFMSEKEEDLPVAGV*
Ga0074212_115435	Ga0074212_1154352	F101097	MTVKILWQPPLVPEERKKAQWENIIRFELGEGIDGLDVSLRFAEERLRWQLDTVGAPPDHAAVYRGRLVDALRAAGKPVE*
Ga0074212_115448	Ga0074212_1154481	F096527	MPQTFTEIADNAIIDIKVNKSFYFMVKNLGFTLFKLMSPEESQIFNELMQKKDNNLLPDYNNLSQPQQNFYTVMLLLAEIEKEALKNNLIQSKEVLMPEDEGFNPETIQKEFDIPDPTTQD*
Ga0074212_116169	Ga0074212_1161691	F000318	MNLLCRLIIPSILASLCLLAVPTPAPAQVTSGDDAAALQKRANEAEARIRGNEGDSDQLKKAVKINDVALVKQILLRNGFTAKDLENAKISLRTGGGKGGEDKIAISVSCCDPKEITIQRTLENFT
Ga0074212_116440	Ga0074212_1164403	F102951	AQQTGAKLVELPVMVGGVPEATDYVSFIDYNLHTMLKALQGGA*
Ga0074212_117658	Ga0074212_1176581	F043354	MSLSILFKINIYIMEKLKQSIKEYQTSSKTYIKYDTDGYNQYQNYLYKRALHGLSAMTEKEIATMCSKKKQRIINVYKRAQVVINKLKQQATISYSNFLFKSLFPNSPITEFLLTETETDVSIINTLNFKDLN
Ga0074212_117659	Ga0074212_1176591	F076869	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYMLPIEEIVELQKSYSAEKLVSA*
Ga0074212_117659	Ga0074212_1176592	F053753	MNHQLKFGYSQLGYNILVKINCKISSADAVNLEKEYPEICTMQSRNGYRIEGCFNTKKDNFYCYKKFEDFKLSLALKMNDFKINKLIDKSQALLNQENMKLSVANFDEL*
Ga0074212_117659	Ga0074212_1176593	F030735	MNTLIFLWYLITGTVVYQQEMDGRYQYALFFPDGKVVDYATKAEILEYIESGTFEYNEDL
Ga0074212_119324	Ga0074212_1193241	F105254	MAETATIYRLYGAQGTKNSLAGKVGRFCTQDAEPGLNNPCKVPPTGVYDSFRVTDCLGITGDFNQVREIYIHGDGNFADDWGLDSANGGGLFIGHRDTGDSGLPIDVGLHGSNQYAVATGTIGTKGDSIEDPTNGHPYYRTQSVKVLDFDDCTPESPLLIDSGPYTDDFYSKAWVFDLRTVPTSVYGAKSPKAAVVTYNIF*
Ga0074212_120418	Ga0074212_1204182	F102636	MLDVAGNVEIEFGGSRGRLVAEGQRFVLEVDDPSVLIGVFELRSLRTLAAGLAGAGFTLDVRSGDRLLLLAGRDARPGILSRLLRLPRVQLGPRFALRSALGRGLPRP*
Ga0074212_123257	Ga0074212_1232572	F072884	VRLYVVQMFYSSLKESAPLVAEAKNNVAALSKKDFVLMGFGEHTAAIAFASTEPEANMRAQFERIRGENFSLIAFEAAWIVGGNMSKDVSLWLERHQPSPFK*
Ga0074212_123381	Ga0074212_1233811	F040291	MSTPGTFKNVIKTDRAPAQALPVDEFLAELDRYIVDHDPYGQNKVITAIGNGTASLDVVKRYAMELYYLGRWMTPEFPLLIANAPDTDCFVMEDSEHFHHWVQNFADETGFLRDPNHVLMKVWYTRAFGIPDDELAAYEPMPETVGSVFTLL
Ga0074212_125072	Ga0074212_1250721	F007886	VVEDDGAAVVVFEGELVGVLAGTEEGGEAGVEGGVGVVLSDVSGVVSFFSPVAGADAGASLSEEGFILSE*
Ga0074212_126501	Ga0074212_1265011	F002429	LALAGPVWAQSAIELKKELLPKIKKAQADGKDLGEAATEYKEGDKALMDGLQEEAVAHFKKSKELMPKE*
Ga0074212_126619	Ga0074212_1266192	F034202	MERPMNAPGLIYRNVSWLFLANAFINWTVSLPGILDPSKAAAAFGGIEPNYPSVIRLWQGFVFMFGCMFWEVSRDVRGKXALIKYNWIEKTITATAITLGYFQGDIPQRLMILIVFTNWLWIPFIVWADVAVTRASRRTSQA*
Ga0074212_126735	Ga0074212_1267352	F103861	TRQIETLIGCILIVLSMVCWFAAASQHPTYVMILPSLLLMAGGFGMIRLFGHMGVIKETGKRWALTLFGTRTFSNHVGAAVGAVVIGFVLPAMTMNALSNDPQIAKQAAVVAGVAVALVVVSSAIFAAFKDEFLGLEDPHWHTPKVPSPDDPE*
Ga0074212_131587	Ga0074212_1315872	F018151	LMKRLRIGIGILMTISAKAQTNYNNGRTCDFILVQGDTSLITGFNGLDKKDFGIYLGVKYGGLFSGSIFYTPFNSINRLGISKGYMKDGVRATAGIKITPTGTSSYSLIPEFGVALHPIRLISQDPYSFDIVLSYYQSSTARFGFGISFPIQYRNNFRL*
Ga0074212_131783	Ga0074212_1317831	F078294	MVTISTDAQVVGETSSTLWSVIQQGPVSLLLHIKNSGVNTMNYRIQEYNGTAWADLGASGTDYYTTLAANEVKSFKVSSNYPQVQMVGNASGGAYLEITISRVTNRSSGGSFPLINL*
Ga0074212_134518	Ga0074212_1345182	F076870	MEKTATNDIVLTKKFKKFLHSIIEEHYNMTSDVTGSGHTLNYLWYMYYKGVKAGTYRPFIFMAEMHLLKEMGYMTIEDIQNINNMIKSEDKDNFYIGYLSLESLRSKRIKEHGIFSQANKIYTDYISSYASKILNTTLFQNALKN*
Ga0074212_137171	Ga0074212_1371711	F020989	MRISNEPDRRRVAVAVTSDGRRVQLPVENAEVPVLSLIRSILVGIESLVLLITGARREHGGTRRNDRS*
Ga0074212_137540	Ga0074212_1375401	F074780	MQPDTILTEIRQTRDDLARETGYDLKRLFDYVRERERETAGRGVKFVSPAPRAKETADSLREEPPKPK*
Ga0074212_139622	Ga0074212_1396221	F021332	MAKKRARTATSSRAARQKLPLRTQVQHDIDKALAQAGIPCAIDKDGWRWMQDPSGEGLIGVAAVSGKGEDLSLRVVAPIMSLPTNKTALFTLLKKIAETNYDVPGHSRLAIDSHTVWSVVAHN
Ga0074212_141024	Ga0074212_1410243	F029409	IHSGKWIFIRFNPDNNISKVDIDAEGTFGDKIDKLIETIKECINQIEHDENTELVKIIKLYC*
Ga0074212_142198	Ga0074212_1421981	F030791	DGRPIKRKMFAAGNWKGYDMMSSVGGIYADPASDHFVLISRDGMLPYIPVTRNQFLDRAIQYVTRYYDELIKKILKANEALPEQVRSPQKEIDDQNAQNTKAKNYALKKLHDALEKTTKDSLLDAPAVVRIDALLMNEGPVFQSEAEGGCMLATENPNYFRKELPKYVPQFFVIELMPGDPKHSNMNFKNIIEANFPIEKLQAMIDK*
Ga0074212_143192	Ga0074212_1431923	F037096	MDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGSTE*
Ga0074212_144932	Ga0074212_1449322	F053753	MNHQLKFGYSQLGNNILVKINCKISSADAVNLEKEYNEVSVCQTRNGYRIEGSFNTKINNVFAYQNFDNFKLSLALKMNDFKINKLIDKSQALLNQENMKLSVANFDEL*
Ga0074212_144932	Ga0074212_1449323	F076869	KLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLVTA*
Ga0074212_145055	Ga0074212_1450551	F078120	MKGLTTIGDKDTATPLPRLYLRPDEAALVIGVSRRTLSAWQSARVIGFRRIGRTILFSVADIQAAVDRYRIAPIGEPRPRRLSVETGTITAPATGGSSRRANA
Ga0074212_146720	Ga0074212_1467201	F085346	MNQITQMFMESNGRMKQIMKGGYKVDQITSAQREFEGQIKLINTVVQAFAIQSKNKRAISGLERMNIMDENTAIDLMLGDPEIDKVKCPEHDNLITRAECLDYSGSHFDDCRGCEIGAATKKRLLPDGETNA*
Ga0074212_149180	Ga0074212_1491803	F089074	MRSGKILRHSVSIDEQEVFSLIHRPVELHELQPSRFTGRVATWAEHAERRYGDAINPVITYVENGPHRVSWIYHEGVDWRSGERFAVYHIVCDCIAGVEGNSPRECVDSILGCGAVLRA
Ga0074212_150478	Ga0074212_1504782	F073864	MDPARLPHTPHPLAPGPLTACYLPWLKVSVALRYVLTFPWTPDAWREVRQHIPWLLAEQDRRRKAGWFN*
Ga0074212_150743	Ga0074212_1507432	F047453	AAWTESMPKQXREGETDSPQGQRPPGASRTGXSWTEFVRPAHQAVVAFVGAGIINPAEPRACGHSREPICLDSEPDTERNAGSASNAAGDGCGRARSDEAGFQPYRGKLAVRDEQRGWGKRRQDLMAACHDARKGRNIGIHWSKPVAPPLHSTGYQSEIIALDL*
Ga0074212_150797	Ga0074212_1507972	F060856	MNNTKTIKLVDDYAALSAQAKVLNELVDAAKSKLIALGDGSYNGTLHKVVVSTSIPVRFDSTAFREAHPSLYEEFKAQGNPVTSARIHGR*
Ga0074212_152128	Ga0074212_1521281	F022541	NNNPLMNSGNQMRTAMQQGTSESLTTAASTAPPQMQPTLYRQAAQKAIEEGNPDRALQIANDHLDESGRNSIMQAVDFKRMATTASPEKLNEIKQQLASLPSDSDRVKYLIDLSMATRKDNPKLALRFLEDARNLVNKRATTYKEFEDQVRVADAFAALDSKRSFELMETGIAQLNELLSAAAVLNGFEVEIFKEGELSLRADSDLVGMVARYGQELASLARVDFEHAQMTADRFQLVEPRVNAKLSIVQSILGTQPAGGNNNRRGQNNFQFVLR*
Ga0074212_153796	Ga0074212_1537961	F058261	MRGDASRVTDKPADMVPSNLTASGALGVLWRGTEDNVFKAQGQPFLEVDAIYGDPDKGHSRTPYDAFAMKLRFGGGSALSEARVRGRLLGQPLNDDKIQFSVVQSYDFQKNDAYATGSQSFDGVFGFTQNLSSTTRFWLLGWAGLTVLGAIDSLPLGLTEAPEEEESGDGGQGVSEGPRYYDYGPGSDFGATAIFSRNNRPFVTLFYEGRHLYSLDGVRANHFLQRGRIDLLLPLRGAFGIGATGEYFDR
Ga0074212_157399	Ga0074212_1573991	F049737	MRDPTLALKEENRSAKSNLDMDIDEVIRSLEKAAQEIEKADWEHGGRKKKASL*
Ga0074212_159452	Ga0074212_1594521	F046458	MRSSLETAVRLAAAGALLVALAGCGGDSVRPPVVVITPEPVRGVIAQTTLSGFQTGVWISIELILSQRGVLDITADWTYPETWMYVYLGRTNCTYDQLSSGRCPFIVSSETKDPKPRVLYTGTLEPGSYYLVLYNVPRDPRTGIGSDATESVSLQLGLTVSASGERSTDAVRLGRPIVISPPRL*
Ga0074212_162022	Ga0074212_1620222	F023890	MRGLRLVWSQPSRRSDDRPRSLLLVALLCIFLGGVVVGAGGRDLAEAPRPVRAAFASLLTTGAVLFVVGLALAAIRRGKKRRPVCLSLARPLGGTAAAETQRHFGQEERR*
Ga0074212_164344	Ga0074212_1643441	F076001	MKNRYKKAIAGRVNPDIRNKVQPLIEKFAQENQLPFNTVFGAAMFAAERLKGRVTCARVEALVTAATVQAYELEMQRRTTARKVQITGIISRALPVAKRTTEVIEKLYSQFCGFQGSIPALMQQVQAAAATA*
Ga0074212_164512	Ga0074212_1645122	F031716	MSRFSPGPWHVEEENGSYGVFSNDALLALALSDDVKDKDAAKANAHLMASAPRLLEVIKAIKEHLDNNLIVTGEGLKINDSHLRESIIDAILKAEGYRL*
Ga0074212_164995	Ga0074212_1649952	F001817	MMQTDVKAAHLSAAGSFVLGRTRLKGIVISPKASTAATFEIRDGSATGAVLFTMDIASVTTPVNFSILIPGEGILATTGLHLTTSV
Ga0074212_165399	Ga0074212_1653992	F041837	MDAFSPKLAEHWLASQAMPVDERPGSRGENSLSPAQQEAWEELAERVNAARSVY*
Ga0074212_167905	Ga0074212_1679053	F029667	PRMGGREFRRAQLNDPMVATVPVAIMSGAADAAVLSQPLGAVATFSKPLDIAYLLEVLRDHCGGSLTPAD*
Ga0074212_169754	Ga0074212_1697542	F088340	MIPLKKIDARDLCVGKQYLIEYAGSHVVSNPRFKGYFIGNILPECEYQCILSKFTNILQKENVSIPDLKLQDCFYNYYETGALYRAATILLLKRITGDENFTLIT*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005491: Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Formaldehyde enrichment

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences