Sample 3300005480

Basic Information
IMG/M Taxon OID	3300005480 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111623 \| Ga0068661
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0800_B MetaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0800_B MetaT (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	20326216
Sequencing Scaffolds	15
Novel Protein Genes	24
Associated Families	16

Dataset Contents

Total Genome Size

20326216

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Ecosystem Assignment (GOLD)

Name

Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.539	Long. (^o)	-110.798	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.539

Long. (^o)

-110.798

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002795	Metagenome / Metatranscriptome	529	Y
F006938	Metatranscriptome	361	N
F007225	Metagenome / Metatranscriptome	355	Y
F009403	Metagenome / Metatranscriptome	318	Y
F010686	Metagenome / Metatranscriptome	300	Y
F014385	Metagenome / Metatranscriptome	263	Y
F015874	Metatranscriptome	251	N
F037242	Metagenome / Metatranscriptome	168	Y
F037503	Metagenome / Metatranscriptome	168	Y
F053114	Metagenome / Metatranscriptome	141	N
F077351	Metatranscriptome	117	N
F084273	Metagenome / Metatranscriptome	112	N
F088951	Metagenome / Metatranscriptome	109	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0068661_100120	Not Available	667	Open in IMG/M
Ga0068661_105362	Not Available	572	Open in IMG/M
Ga0068661_105563	Not Available	977	Open in IMG/M
Ga0068661_106304	Not Available	752	Open in IMG/M
Ga0068661_107244	Not Available	634	Open in IMG/M
Ga0068661_108437	Not Available	706	Open in IMG/M
Ga0068661_108805	All Organisms → cellular organisms → Bacteria	2765	Open in IMG/M
Ga0068661_109131	All Organisms → cellular organisms → Bacteria	2906	Open in IMG/M
Ga0068661_110877	Not Available	556	Open in IMG/M
Ga0068661_110977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	666	Open in IMG/M
Ga0068661_145242	Not Available	585	Open in IMG/M
Ga0068661_145493	Not Available	592	Open in IMG/M
Ga0068661_147939	Not Available	1195	Open in IMG/M
Ga0068661_150586	All Organisms → cellular organisms → Bacteria	2037	Open in IMG/M
Ga0068661_150917	Not Available	672	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068661_100116	Ga0068661_1001162	F053114	GIVAFINSLVEIWNGWMDALLHPAQAMPSIPALRWIVDWLGDIADYTRLMYMLVDYVAYASVVQQALVAQLTIVTIGLAFRAWLVIRRVVLVS*
Ga0068661_100120	Ga0068661_1001201	F009403	VFRITRRGRGSGRAPALSVVRAGSRLEVREGRYGQGACYAYCDVDDTLAAHTLLLTFADMRARVIYIHTDIPVISERRFFDACSRSRSGALP
Ga0068661_100197	Ga0068661_1001971	F007225	SSVRPELGNQPQKGGCVMRKFAAITALLAVATTASFAQFGIYGATATGNSTGLGGGFQGGFVNGQEFDLLIRMDVPPGVPRFPRNGGGSLAFNFNPRYIDIKVFDTATGNPITIAQAVAGAEVGQIVNLGGYAYPGTTTAGRDLVGAAAFGARKNPDGTIGVRIAFLSTS
Ga0068661_102009	Ga0068661_1020091	F006938	MLRIRVTIGRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVEVLFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALSEDVRSRLADAMNEAYKVFGVRGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLPVYTEGLARAQNIMEKAMRRKQPYCELAPCLAYLRTQ
Ga0068661_105362	Ga0068661_1053621	F015874	AVTKQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLAARCNYIDPEASYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFAQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPNSIIGEI
Ga0068661_105563	Ga0068661_1055631	F015874	MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLAARCNYIDPEASYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVLSVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPNSIIGEILSSMRKREGLNGA*
Ga0068661_106304	Ga0068661_1063041	F077351	VGRIIRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAVMEMSRSLPSDVDAAPSFVVNVVERGESVVVQSSYPLEDITPRHTLWSAIALSPVPEYGPPRTVYMEWDRTLIASEILRAIKEEDD*
Ga0068661_107244	Ga0068661_1072441	F015874	TTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLATRCNYIDPETSYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPNSIIGEI
Ga0068661_108437	Ga0068661_1084371	F077351	QDLLLSEKEWLVLWRGVLATRCLFVDPEGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAVMEMSRSLPSDVDAAPSFVVNVVERGESVTVQSSYPLEDITPRHTLWSAIALSPVPEYGPPRTVYMEWDRTLIASEILRAIKEEDD*
Ga0068661_108805	Ga0068661_1088052	F037503	MYFGTASWLSVIEVELLIGLEGFTAYQTQINSECYNIYTGVSHWVLRSSDERERTQTIS*
Ga0068661_109131	Ga0068661_1091316	F010686	VWKRGELVGCGALDSCGQATKGAWGMSRHQEAMKGVEDCEKPREAVKRALIRGFPNQPALNP*
Ga0068661_110318	Ga0068661_1103181	F006938	MLRIRVTIGRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVETLFGKEVRDRARNYTRSGATLELLYESLGKYDHGDVAWSALSEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYTEGLARAQNIMDKAMRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFELNLIEGAFADAYQEALLARNAPVLPRTNRWIAMALDHVKQA
Ga0068661_110877	Ga0068661_1108771	F077351	MAERTFSLFSDNGDVTVASFCRIIRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLTEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAIMEMSRSLPS
Ga0068661_110977	Ga0068661_1109771	F088951	MRSLTPAQAGFPPARRDFSRQAASGNTLSHKVRRSDARNSHATR
Ga0068661_110977	Ga0068661_1109773	F088951	RASGMRSFKPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNSHATRCAESLSEKL*
Ga0068661_145242	Ga0068661_1452421	F002229	MVTLLTLDGVEDVDYAPSDAEVRASLDDAGLYGMVLNGVTWMRLSSGAGWWTVIGGRRVTATLAAVGWCWVADGLGARGYWSPALACVPTEVRALCGDGCADDEDEEGGDGDG*
Ga0068661_145242	Ga0068661_1452422	F002795	MATDSGLVLRGMVAAYREFVSRRDGKLYRVVTVFGDLVAGGTVLCAVDGYDVFVDSPGYTRGEMVELPARLQFVRDASGRPVVRL
Ga0068661_145493	Ga0068661_1454931	F001381	YVLLWLALAALAALWLPRWALPAVLVQLAVAYVMLRSWLTAACGDD*
Ga0068661_145493	Ga0068661_1454932	F037242	VQTISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLHDDLGGWRALPAVYADSGVVADGVTYPASLPVVRAGRELIWIARCDAAALI
Ga0068661_147939	Ga0068661_1479392	F001381	MHYVIATLYVFVWLALAAAAALVLPRWALPAALVQLAVAYVMVRAVWLTVARDD*
Ga0068661_147939	Ga0068661_1479393	F000642	MQEIGVALALCAVGAAVWYMRRREAGAGRVRGWLLLYDAVGGWRALPASYGDAGIVADGVTYPASLPALRAGRELIWIARCESAALIEHQALERAREAAALASLWRGGGQWIDFLPVAGVVLPAAFAYFTWAQ
Ga0068661_149402	Ga0068661_1494021	F006938	PLSPMLGTVKTGHVVDRRAAELVEALFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYAEGLARAQNIMEKAMRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFEL
Ga0068661_150586	Ga0068661_1505863	F084273	LKSVIRAVALAAVLLLAAGVADAAAVDKNILACGQNVGRLILSNPAVYDDGTLGGVTVQGSFSGNYPPLRNGIEIRWVQLISTTHPLNTNAGANTPYFDPGELDMTGDYDPFYWNTTLQGKDNNNYPQFWYKNYQFNGGQGITFYDQPKRLKSSAPVSWLAELNLVCWETGTKNFSVLWTGTYGFNIAQNGNVTVNGWNELANPAWLTQARLTQYFQDWTMSDACQNCLVPEPVFLQMGALLGMSGLGVVASRRRAGRRSS*
Ga0068661_150917	Ga0068661_1509171	F014385	VIHSESPDWWQLVQLVCVRMALEQLTPEEERAVWLYAEGATLTPKQRTLAETALQKIRRMLGVNAP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005480: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0800_B MetaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences