Sample 3300005463

Basic Information
IMG/M Taxon OID	3300005463 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114420 \| Gp0111511 \| Ga0068485
Sample Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0125m
Sequencing Status	Permanent Draft
Sequencing Center	University of Hawaii
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300005463 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114420 | Gp0111511 | Ga0068485

Sample Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0125m

Sequencing Status

Permanent Draft

Sequencing Center

University of Hawaii

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	5197944
Sequencing Scaffolds	39
Novel Protein Genes	42
Associated Families	33

Dataset Contents

Total Genome Size

5197944

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	16
Not Available	18
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine photic zone → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine photic zone → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	N/A	Depth (m)	125
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

N/A

Depth (m)

125

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F004618	Metagenome	430	Y
F005093	Metagenome / Metatranscriptome	412	Y
F006402	Metagenome / Metatranscriptome	374	Y
F006716	Metagenome / Metatranscriptome	366	Y
F007891	Metagenome / Metatranscriptome	343	Y
F013574	Metagenome / Metatranscriptome	270	Y
F016883	Metagenome	244	N
F018014	Metagenome / Metatranscriptome	237	Y
F018612	Metagenome / Metatranscriptome	234	Y
F020189	Metagenome	225	Y
F026022	Metagenome / Metatranscriptome	199	Y
F026396	Metagenome / Metatranscriptome	198	Y
F031128	Metagenome	183	Y
F031251	Metagenome / Metatranscriptome	183	Y
F040847	Metagenome / Metatranscriptome	161	Y
F047318	Metagenome	150	Y
F049032	Metagenome / Metatranscriptome	147	Y
F052888	Metagenome / Metatranscriptome	142	N
F053539	Metagenome	141	Y
F055781	Metagenome / Metatranscriptome	138	N
F056052	Metagenome	138	N
F058203	Metagenome / Metatranscriptome	135	Y
F067096	Metagenome / Metatranscriptome	126	Y
F067841	Metagenome / Metatranscriptome	125	N
F080159	Metagenome / Metatranscriptome	115	Y
F081428	Metagenome / Metatranscriptome	114	N
F082799	Metagenome / Metatranscriptome	113	Y
F083235	Metagenome	113	Y
F098017	Metagenome / Metatranscriptome	104	N
F101305	Metagenome	102	N
F101315	Metagenome	102	N
F101319	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0068485_10414	All Organisms → Viruses → Predicted Viral	1095	Open in IMG/M
Ga0068485_10455	Not Available	1186	Open in IMG/M
Ga0068485_10658	All Organisms → Viruses → Predicted Viral	1431	Open in IMG/M
Ga0068485_10756	Not Available	626	Open in IMG/M
Ga0068485_10869	All Organisms → Viruses → Predicted Viral	1106	Open in IMG/M
Ga0068485_10903	All Organisms → Viruses → Predicted Viral	1148	Open in IMG/M
Ga0068485_11052	Not Available	898	Open in IMG/M
Ga0068485_11255	Not Available	1427	Open in IMG/M
Ga0068485_11352	Not Available	613	Open in IMG/M
Ga0068485_11363	Not Available	630	Open in IMG/M
Ga0068485_11433	All Organisms → Viruses → Predicted Viral	1170	Open in IMG/M
Ga0068485_11559	All Organisms → Viruses → Predicted Viral	1244	Open in IMG/M
Ga0068485_11658	Not Available	977	Open in IMG/M
Ga0068485_11805	Not Available	1185	Open in IMG/M
Ga0068485_12007	All Organisms → Viruses → Predicted Viral	1390	Open in IMG/M
Ga0068485_12030	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	971	Open in IMG/M
Ga0068485_12038	Not Available	991	Open in IMG/M
Ga0068485_12065	Not Available	805	Open in IMG/M
Ga0068485_12133	Not Available	931	Open in IMG/M
Ga0068485_12140	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	576	Open in IMG/M
Ga0068485_12401	Not Available	877	Open in IMG/M
Ga0068485_12483	All Organisms → Viruses → Predicted Viral	1208	Open in IMG/M
Ga0068485_12865	Not Available	1111	Open in IMG/M
Ga0068485_13030	Not Available	1037	Open in IMG/M
Ga0068485_13203	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	891	Open in IMG/M
Ga0068485_13465	Not Available	550	Open in IMG/M
Ga0068485_13496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	768	Open in IMG/M
Ga0068485_13678	Not Available	566	Open in IMG/M
Ga0068485_13929	Not Available	975	Open in IMG/M
Ga0068485_13978	All Organisms → Viruses → Predicted Viral	2261	Open in IMG/M
Ga0068485_14081	Not Available	726	Open in IMG/M
Ga0068485_14459	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	660	Open in IMG/M
Ga0068485_14828	All Organisms → Viruses → Predicted Viral	1719	Open in IMG/M
Ga0068485_14858	All Organisms → Viruses → Predicted Viral	1090	Open in IMG/M
Ga0068485_14873	All Organisms → Viruses → Predicted Viral	1040	Open in IMG/M
Ga0068485_14885	All Organisms → Viruses → Predicted Viral	1387	Open in IMG/M
Ga0068485_14948	All Organisms → Viruses → Predicted Viral	1276	Open in IMG/M
Ga0068485_14960	All Organisms → Viruses → Predicted Viral	2398	Open in IMG/M
Ga0068485_15011	All Organisms → Viruses → Predicted Viral	1667	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068485_10414	Ga0068485_104142	F031251	MFHLAVIATTFSCIDAQILIDKMNEYNIPEETRAEMISVVVEETPHCWDAKAD*
Ga0068485_10455	Ga0068485_104552	F098017	MNEQDYKNLIITYQQKSFDLFSQNVALEAKQATLSQLVKDLTEKVEDLTKKLERKNRGTKKQIAANIDSEKF*
Ga0068485_10658	Ga0068485_106581	F026396	MEEKMLREIANDAITPKKTNKKVQNDLYEKVEDADFYEGLDYDDQMIPSAES*
Ga0068485_10756	Ga0068485_107561	F101305	VKKGVDGSRGVCYTVCVMRNFLIYYRPDVHQGRENTKGLAFNYSVEVEEQFANRLNPSCKADTVCAGITAKCTETGEWKRFRWDRILSMVGES*
Ga0068485_10869	Ga0068485_108693	F006716	MKTFPTVNPTDFHMTNYPASIYSEIEQFCNENEFTVDYFLSEFAQKEEQLQRPFRAYRGRSPLNDC*
Ga0068485_10903	Ga0068485_109031	F007891	MTLYSNFFSNAVNSVETKEKEVLITYSSNIAKEYVYNCEDVPAFTNNLCSVLISNELQQDGGSVGSFIHRSRKDEVLTEQ*
Ga0068485_11052	Ga0068485_110522	F058203	MSVLHHEALLETIYEEVLEEYPQFDEEQCESIAYARFEDLCQ*
Ga0068485_11255	Ga0068485_112554	F083235	MGLEAVIWFLPFLTEAWLWEKSVNIAIGLTVLFGKRRNWCNEYDSQGYDGIFYCL*
Ga0068485_11352	Ga0068485_113522	F007891	SSAINSVETKENQVFVTFSSNIDKNYEYNCENVAEFTNNLCSVLISNELQQDGGSVGQFISQARKSGVLVDTPTS*
Ga0068485_11363	Ga0068485_113631	F013574	MDITKIIQILSEAVDDKDWDVIKELLEDLIYEEENPIKEYEKDSDVDEENLWG*
Ga0068485_11433	Ga0068485_114332	F018612	MAGSYAREGDMTTGHGSYPPAIFEVGSSLCQKATIEGKPILTVDVYCGAHTSPTPSPTLGGKDNPLGGKIIEGSPTCKVLCDDGVYRFVARIGDSLDCGCKIVGGAKTVGGGAGG*
Ga0068485_11559	Ga0068485_115592	F056052	ILTDNFLDQSKFDNLSAKVAASSAYNTTTVQDLRDDLFTEVYTAVFDRLKEIGLHQPHFDESVKLFGYNQFRPANEGYGNFNGPHFDHGGYVFYIHPHWDESWEGKIKITNADEEQYRNGIYAKPNRFIWIDPGTYHDVTTTASNTTHARVANIAFLGRDIHVDPVGITFINILTTS*
Ga0068485_11658	Ga0068485_116583	F026396	MLREIANDVQTPKKRDSKVQNDLYENLEDADFYEGLDYDDQTQIIG*
Ga0068485_11805	Ga0068485_118052	F016883	MTFSKAWLEKKIMCGLCNFGCCNHQNFHVEITEEEQEKYRKEFGLDLELEWPQDGCCDLLHEDGSGCSLGNDRPVFCKMYPLVENKSGRVVINNWAYLHCPKPDNYELDKVVDGKYHYKLKKKHKNKRDKLILDDKIENVVKQIWIQSKEALIKTYGQEFYEKIKNEMKQTIKHEFF*
Ga0068485_11805	Ga0068485_118053	F055781	AGSGLSMLGVALGCKLYNKNVKTIHPVALSSYVYKNKKMWYDRLSPNDKFDGDFKVVQSEYPYQHKLKLDESLPLDQTYEAKAWDWMVKNLEPSEKVLFWDVGIKEYDLDYIEPIKWHKSEYEMIIDREVRRKSKVTKHDFF*
Ga0068485_12007	Ga0068485_120074	F040847	MEDFIKDALPQEVKEFQEALPLPEPVDTESVSVGTGIGIAALVLILVAAVAKYKCKCKK*
Ga0068485_12030	Ga0068485_120302	F000973	MSNGLKKGLEDIAWELKGIKNILSSIWHSKYEKGETDILSPEAFSDEYISTEECSRRLGVSDQTLRNWMAIGRKNPSKGWVEGIHYVNASPDSGRKALIRIPWNKLVQSFAKNRDLVSQDYRKQASPMYVSTSSGKLT*
Ga0068485_12038	Ga0068485_120383	F082799	MTKRSEKEIIAAFTHMATAELKGTIEHLTTYDSKGTISKKIVIEYNIEHNKRETV*
Ga0068485_12065	Ga0068485_120651	F020189	MNIVFYSYKINRSSHINDHELKRLDHSISSLRKFNHEIPVYLFCDDPEFIPPYFSLEYDVRVLPFEKAHNHGMLFIHKWYNLKFFDKRSGEFDSSNILYVDSDTLFYGDVQYLFDHYNYAEVFGREEFGFRHDPNTGGGKDIRKALDYVDQCIVDAGGKTQVYKYCLGVMLFNNGLHLDIIDRLGELVELMLKIKDRKIPYPVPNPRINDEYAMWVILSRIGVIGGLFGVQDVTQGYVEQKHEEFFNPIVLHY
Ga0068485_12133	Ga0068485_121331	F005093	MSQTLRTLSITEAEETAFVEIIRYFNDMGLPDNINSEDYDSLTNKVFE*
Ga0068485_12140	Ga0068485_121401	F081428	MASPINQYAIYDCNILRMNLNEMVQRRAASQGKELTDEQIDDIAVVLRRKIDWEPIFSQIDQYL*
Ga0068485_12401	Ga0068485_124011	F026022	MNRPNLPPILNTKEYNSLVQKYKQEEKDKQYCYKPYRTIHNY*
Ga0068485_12483	Ga0068485_124833	F049032	MINTNNYSQNRGSEVINKLTDYSDNVNMYSEILHYYVTEKYTVFPQNINNSCGKSMN*
Ga0068485_12865	Ga0068485_128651	F067096	MATYKSNAGAILQPGNQINRLSGYNDEGVFGWPGVEAFEL
Ga0068485_13030	Ga0068485_130303	F007891	MTLYSNFFSSAIESVETKEKEVLITYSSNIEKNYVYNCENVPQFTNNLCSVLISNELQQDGGSVGAFVSQSRKEGVLTDQ*
Ga0068485_13203	Ga0068485_132031	F101319	MKKIVIAPIFNDTHLVKLQIPNIIKSINPDYILYNEGMFPSGPESTTNVDNDFVNKYTLDGKRGFDYEELQDVISDAQKKYKDTKIMLNTMDYQSTDAPTNYYHGCSNFSDFGVEVEEGDLIFPYEGDVFHHEDDADTIEEACNKLEPNQGLKTIWVDFIANQYYAEEKTLKPFFKAETGRQRRFVIKYGTDDYYKDVLLNFMTQKYTMLEDLEMITYHYAWFRPGKYAEMRLAQLNRNP
Ga0068485_13465	Ga0068485_134652	F047318	MKKDKKNTKITYSEEALKYFQEMNDNDEFMTEPVSGDYVDYLLGDVGNNSYEGTTMDTEWDDLSDDSDWFMD*
Ga0068485_13496	Ga0068485_134961	F004618	TYGMKQSNEDISLKDCEEQLQEWAKELVDRELRRRPEGEQLAQLEAVKQKAMDIVYENGDDASIAKALDSCTKKIGITWVVDTSKIKQISA*
Ga0068485_13496	Ga0068485_134963	F053539	MTKFPFKDGTMFMITYTPQTIGGEVNHKYKHITRRGKWNSKCKMNKNFILYYDRDRGNYRYASNKLSPIYVSLGLNMEEMKVMN*
Ga0068485_13678	Ga0068485_136781	F052888	MNPKQMRKIRYKAKRILLEWVKHLVKKENQHNITPEKFKVLLNTISYKWNGTTKVLQPMSYRWLVQTLKKNPEATLEDIEKIIEPSERALRRERMAREGPIAF*
Ga0068485_13929	Ga0068485_139293	F026022	MNRPDLPPILNTKEYKSLVERYKEEEEKQRKYCYKPYRTLHNY*
Ga0068485_13978	Ga0068485_139782	F101315	MHPDKIKIAPEREFEYEKISRTIDKMDDMEDVKLLLKYTIKMGMKQTEILGNMLLVKY*
Ga0068485_13978	Ga0068485_139784	F031128	MNQTNKRCLKELDTYWNERLAYLAQSDRLDDAEALYSEYNIDGENLIYEAFDRNADILFLEYLNDL*
Ga0068485_14081	Ga0068485_140811	F080159	MSEARVNNLSNESNTGGPTITGITTFSGTNYFVPPVGNTAQRPDNPQKGALRFNTDTKHLEYYRGDTIG*
Ga0068485_14459	Ga0068485_144592	F006402	MGSDETAITIPGGPRVIDVFDGNGAPSGPNCTLFSGIDRLLVVFRGRSSSG*
Ga0068485_14828	Ga0068485_148282	F067841	MLKKLKKVYVNFTVAFAVPLIVFSNVSGVYNGWRERQYEMFEKRELCAKLVKQGAVTSQFCNEEIKYGMGPQEEFDYRVTPIFKQIDLAGLYINQYFMMVYDWVWIRMVNFERWLNYQIMLFRT*
Ga0068485_14858	Ga0068485_148585	F040847	METVIEDLPIPKEVIEVQEALPLPEPKSEGIGVGTGIGIAALVLIVAAAIAKYKCKCKK*
Ga0068485_14873	Ga0068485_148732	F040847	METIIKDLPIPKEVIEVQEALPLPEPESGGLSWTNGLGIAALVVILVAAFAKYKCKCKK*
Ga0068485_14885	Ga0068485_148855	F026022	MNRPNLPPILTTKEYQLLQSKYKQDEKDKQYCYKPYRTIHNY*
Ga0068485_14948	Ga0068485_149482	F005093	MSDSKFRTLTITEAEETALVEIIKYFNDMGLPENVNFEDYDSLSDKVCEPAFWEYS*
Ga0068485_14960	Ga0068485_149607	F018014	MMVHLTKNEIKHLVYLLGHGDGEQPELNTSCLNKLKPLIEVCTCKEDSNAK*
Ga0068485_15011	Ga0068485_150116	F005093	MSDQTFRKLTITEAEETALVEIIKYFNDMGLPENVNFDDYDSLSDKVCEPAFWEYN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005463: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0125m

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences