| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300005383 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0056601 | Gp0051056 | Ga0074223 |
| Sample Name | Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Summer |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 3325304 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine neritic zone → planktonic material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Palmer Station B, Arthur Harbor, Antarctic Peninsula | |||||||
| Coordinates | Lat. (o) | -64.766667 | Long. (o) | -64.05 | Alt. (m) | N/A | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009761 | Metagenome / Metatranscriptome | 313 | Y |
| F018083 | Metagenome / Metatranscriptome | 237 | N |
| F035964 | Metagenome / Metatranscriptome | 171 | N |
| F098040 | Metagenome / Metatranscriptome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0074223_1038 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique | 42160 | Open in IMG/M |
| Ga0074223_1065 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 43695 | Open in IMG/M |
| Ga0074223_1074 | Not Available | 14832 | Open in IMG/M |
| Ga0074223_1087 | All Organisms → cellular organisms → Bacteria | 14158 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0074223_1038 | Ga0074223_10386 | F009761 | MILQKGRRQIKSINILKDPANIGGNEVFKASLFIGYELPKINIINKIKK* |
| Ga0074223_1065 | Ga0074223_106537 | F098040 | VLRLVTAVMIMLLAPVVLGESHWSNWSDKTLCRLSEDPELIEYRKAAKDRGLSCSADKLTSPGTAVAKTNIEGLIINNFRCLQGRHYIGNIINGTDNYISYVRVKSFDYDGVLISSCKTFVGLSPGSFDSFLAVNCNCLKSNRYQIKAQ* |
| Ga0074223_1074 | Ga0074223_10745 | F018083 | MKLILTLIILTSPTSFELKPFEVPVGMSCSQLHDKLVYYVKNPNYENGNGQIWIQSFHNKQPVGGYLCESK* |
| Ga0074223_1087 | Ga0074223_108721 | F035964 | MKNQLVVNNGKLVVATANVEKVAKKVVKFREIFGIRLGAKPSIELRTAVKVLEKNKERSNMTFNYILSEYKKEMIRNDKKTDGKNFEGRLRRILYRSIESGITRESIQGIKFNLNANYKGIKVITSQPFVFNNSANVARKDVEENLYTFKFNKVVTLINKAELKTVADKVKAFKTLIR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |