NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004976

3300004976: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1603 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300004976 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0092405 | Ga0031671
Sample NameMetatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1603 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size149999754
Sequencing Scaffolds2
Novel Protein Genes3
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Pacific Ocean
CoordinatesLat. (o)-11.24Long. (o)-172.63Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014836Metagenome / Metatranscriptome259Y
F022419Metagenome / Metatranscriptome214N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0031671_1327718Not Available734Open in IMG/M
Ga0031671_1329323Not Available690Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0031671_1327718Ga0031671_13277181F014836VGAVVVFLLAALSSLALAQCPLERNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031671_1329323Ga0031671_13293231F014836LLPSAVTMNKLVLLFIVVAFTGLCVAQCPLARDTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTITVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVIAEEFYEVDNDSNIEDMEPFVYACQNPTLTYRDAKIECNLVAPNIMPSSLKVQVLANGYTTDFVLLSEYVQ*
Ga0031671_1333802Ga0031671_13338021F022419MSLRYAALLAPACAFTHSQQPRRIIVRRDYSSIDDVFDSVFDDAFDAWSPFGLSRRRDPWSQFGLSRRRSPLAQQFGQLKRLSQAFEEQLQRVDEDDFLADTPLGQRRQLGTGTPKEDAPTKTDESTSSLYEAPATKDGDAPKAEGDKAVAPAAPRGYAYSW
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