| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300004591 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114290 | Gp0111163 | Ga0066499 |
| Sample Name | Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 15_LOW5 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 60829165 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Sediment (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Lake Washington, Seattle, Washington | |||||||
| Coordinates | Lat. (o) | 48.3807 | Long. (o) | -122.1599 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001633 | Metagenome / Metatranscriptome | 660 | Y |
| F004925 | Metagenome / Metatranscriptome | 418 | Y |
| F014145 | Metagenome / Metatranscriptome | 265 | Y |
| F042356 | Metagenome / Metatranscriptome | 158 | Y |
| F082737 | Metagenome / Metatranscriptome | 113 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0066499_1000443 | Not Available | 530 | Open in IMG/M |
| Ga0066499_1009182 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 510 | Open in IMG/M |
| Ga0066499_1015672 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 639 | Open in IMG/M |
| Ga0066499_1015880 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 639 | Open in IMG/M |
| Ga0066499_1139989 | Not Available | 524 | Open in IMG/M |
| Ga0066499_1144595 | Not Available | 758 | Open in IMG/M |
| Ga0066499_1149236 | Not Available | 710 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0066499_1000443 | Ga0066499_10004431 | F014145 | DFQPGSLPACTASSTANKSAGRFASPLPVGRFLQPPDQCFLARRWPPLARNRSLVTAFRSPATATASRRPPFRGQSSQPATSLPSKFASVPVRPFGSTTASRFAPVAAVSLPLARCTSTTRFSLPRLRSPLPSGTFTSLGIKAFNRVCRLPVHLTNPPDFLSLPAARPDESWGCGS |
| Ga0066499_1009182 | Ga0066499_10091821 | F001633 | LAFAGGVLPDATLRGMRMFRSHGGTVLTVAGRDLSSEASAPGSVASCRKRHAGRGADTPAIFIVSRRHRYHGDGTSFWLAVGPA* |
| Ga0066499_1015672 | Ga0066499_10156721 | F001633 | LAFAGGVLPDATLRGMRMFRSHGGTVLTVAGRDLSSEASSPGSDAPCRERRAGRGADTPAIFIVSRRHLYHGDGTSFWPVVGPALRV* |
| Ga0066499_1015880 | Ga0066499_10158802 | F001633 | LAFAGGVLPDATLRGMRMFRSHGGTVLTVTGRDLLSEASSPGSDAPCRERRAGRGADTPAIFIVSRLHPYHEDGTGFWPAVGPALRV* |
| Ga0066499_1139989 | Ga0066499_11399891 | F082737 | QLAPQPACQV*ARHIQHAGRCPRLAPRPRSFTRSASLLGDTPASLMVRSQNLEAAFHSPTTTSLLPDLRGGVKVPALPLQLCGTLPVCPVRSDLHPRPVSRTAWDFHDQNPLPSGPAPLLPASLNRCSPSGFFALPDQCTRSNWPTGNLLLDTPDLPSLPTGGRIRYQHQRIIV |
| Ga0066499_1144595 | Ga0066499_11445952 | F004925 | RSAVIERLLLTGSEIIPGDWGKAVPGWWARLLGNRAERHGGGGRIHQFLWRRSRAVSNAKKELGGEGR* |
| Ga0066499_1149236 | Ga0066499_11492361 | F042356 | VYQHGAGDSGGFNKPFETAKRKTPKGGQKERTAREGHGDEAGPVKTFQEPAMLKTTPLACERKAT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |