NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004321

3300004321: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3B



Overview

Basic Information
IMG/M Taxon OID3300004321 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110188 | Gp0091627 | Ga0066234
Sample NameSediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3B
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size18762773
Sequencing Scaffolds5
Novel Protein Genes7
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)mangrove biome → intertidal zone → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationSao Paulo State, Brazil
CoordinatesLat. (o)-23.8553Long. (o)-46.1394Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001233Metagenome / Metatranscriptome741Y
F001346Metagenome / Metatranscriptome718Y
F001758Metagenome / Metatranscriptome640Y
F006508Metagenome / Metatranscriptome371Y
F023129Metagenome / Metatranscriptome211Y
F026580Metagenome / Metatranscriptome197Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0066234_100686Not Available784Open in IMG/M
Ga0066234_100958Not Available701Open in IMG/M
Ga0066234_101270Not Available645Open in IMG/M
Ga0066234_101372Not Available630Open in IMG/M
Ga0066234_102883Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0066234_100686Ga0066234_1006861F023129MVKTLPLACESKGNLRVKRRDPWHRANALPEAVADLELSGEDADRQSQTCLNLVRTPVAQPPVQAS*
Ga0066234_100958Ga0066234_1009581F001758VTGERLSQAGWLSPSKSVSKGMKAEAGFTSSSGGVRASSVYAKKELRG*
Ga0066234_101270Ga0066234_1012701F006508VALANALSKAVADQSQVVKTRSKHCRRVLTWFASRWRNHQPKR
Ga0066234_101372Ga0066234_1013721F001346VKTFRGVGGVKNGTADLWTKGNLRVKRRDPWPRANALSRAAADPELNGEDAAKKTQTCLDLVRKPVAQP
Ga0066234_101372Ga0066234_1013722F001233RWKAAVERLRLHVSEIIPGDWGKVESGWLGQPLKSRIARSGGGGKIHQFLWRRSRAVSKREKGTER*
Ga0066234_102883Ga0066234_1028831F026580MRNRSESSQVVQAGFELGRIAVTQRVYGCYCASARTGGSGGLRKEVSQMKDAERRDKVSVRTGKDTRSRQAP*
Ga0066234_102883Ga0066234_1028832F001346VRTFREVGDVKNDTADLWTKSNLRVKRRDPWHRANAPSKAAADPELSGEDADTNTQTCLDLVRKPVAQPPVEA
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