| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300004318 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111382 | Gp0110218 | Ga0065202 |
| Sample Name | Marine microbial communities from Galveston Bay (MSEDA13C- fraction 7) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Shell Corporation |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 20226750 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella → Methanocella paludicola | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine benthic feature → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Galveston Bay, USA | |||||||
| Coordinates | Lat. (o) | 29.5 | Long. (o) | -94.76 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009657 | Metagenome / Metatranscriptome | 315 | Y |
| F034976 | Metagenome | 173 | Y |
| F050381 | Metagenome / Metatranscriptome | 145 | Y |
| F053661 | Metagenome | 141 | Y |
| F076930 | Metagenome | 117 | Y |
| F078289 | Metagenome / Metatranscriptome | 116 | N |
| F085724 | Metagenome | 111 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0065202_1185988 | Not Available | 743 | Open in IMG/M |
| Ga0065202_1187771 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella → Methanocella paludicola | 1076 | Open in IMG/M |
| Ga0065202_1187821 | Not Available | 1090 | Open in IMG/M |
| Ga0065202_1188457 | All Organisms → cellular organisms → Bacteria | 1385 | Open in IMG/M |
| Ga0065202_1188480 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1401 | Open in IMG/M |
| Ga0065202_1188883 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 1661 | Open in IMG/M |
| Ga0065202_1190094 | All Organisms → cellular organisms → Archaea | 4609 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0065202_1185988 | Ga0065202_11859881 | F078289 | PKMRELGVSQEVIQYFISNQTSSVSSEDVIKMKQAGLNNDDIMSAIQSDLYRPEQKTTSMKEVELIAKLKESGMSDEAVLQFIQAVKSTRRVDSDGNIIQQNTNESQRTPYPTEGATFPKPDNYGYDPVNGRFLLLVKPQN* |
| Ga0065202_1187771 | Ga0065202_11877711 | F009657 | LIGIKEYEILYDTGEATKLVAQVNRMAKEGWQAKSIGALGAPTGIRAVYVLMELEVG* |
| Ga0065202_1187821 | Ga0065202_11878211 | F034976 | MRGAQPVRCQKCGKPVGYVTALAKGVLGLQQPLQNAKVVALCMECAQKRT* |
| Ga0065202_1188457 | Ga0065202_11884572 | F050381 | MKKLVVVVAIVLLPCIALASFSLKLDNNTGKKMVYMLYWIDHHYDWPYPFNMAGGELQARQTVDLRENLQTGKYCVIWNNKEGWQNKVMLDVNDTVKSVTVTPIKSRMNQ* |
| Ga0065202_1188480 | Ga0065202_11884802 | F076930 | QGYEIANRTQIDESIPKEAFVDSVLEAVLDSLESTVLKTISHELDLMNKKYPAFDSWKVFADAVMEGAGENFWDRVGNEE* |
| Ga0065202_1188883 | Ga0065202_11888831 | F085724 | MKTMSAILMVLGMTAVYSPESIIPKYFIDEKPQGEYFIYDSKQLVVPKYIVKPEPRGRGYRVYETGKPVLPVYRIERKDALQ* |
| Ga0065202_1190094 | Ga0065202_11900942 | F053661 | VGKVVDMKDYYQTNKGRLLGIGGILIIVGLVLYFARGQEVVLVLPIVGIVLFIAGVLYKPRKKTQQEN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |