Sample 3300004142

Overview

Basic Information
IMG/M Taxon OID	3300004142 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111384 \| Gp0110934 \| Ga0066638
Sample Name	Groundwater microbial communities from aquifer - Crystal Geyser CG09_land_8/20/14_0.10
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	349976090
Sequencing Scaffolds	15
Novel Protein Genes	16
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	4
Not Available	8
All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae → Thermococcus → Thermococcus zilligii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → aquifer → groundwater
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	USA: Utah: Grand County
Coordinates	Lat. (^o)	38.9383	Long. (^o)	-110.1342	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001003	Metagenome / Metatranscriptome	808	Y
F002298	Metagenome / Metatranscriptome	573	Y
F002651	Metagenome	539	Y
F004515	Metagenome	434	Y
F010074	Metagenome / Metatranscriptome	308	Y
F014811	Metagenome	260	Y
F016358	Metagenome	247	Y
F039402	Metagenome / Metatranscriptome	164	Y
F042954	Metagenome / Metatranscriptome	157	Y
F068209	Metagenome	125	Y
F069687	Metagenome	123	Y
F094578	Metagenome / Metatranscriptome	106	Y
F102531	Metagenome	101	N

Family

Category

Number of Sequences

3D Structure?

F001003

Metagenome / Metatranscriptome

808

F002298

Metagenome / Metatranscriptome

573

F002651

Metagenome

539

F004515

Metagenome

434

F010074

Metagenome / Metatranscriptome

308

F014811

Metagenome

260

F016358

Metagenome

247

F039402

Metagenome / Metatranscriptome

164

F042954

Metagenome / Metatranscriptome

157

F068209

Metagenome

125

F069687

Metagenome

123

F094578

Metagenome / Metatranscriptome

106

F102531

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0066638_1009426	All Organisms → cellular organisms → Archaea	2581	Open in IMG/M
Ga0066638_1012897	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	2219	Open in IMG/M
Ga0066638_1036173	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	1308	Open in IMG/M
Ga0066638_1091277	Not Available	759	Open in IMG/M
Ga0066638_1094132	Not Available	745	Open in IMG/M
Ga0066638_1098001	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	726	Open in IMG/M
Ga0066638_1098876	All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae → Thermococcus → Thermococcus zilligii	722	Open in IMG/M
Ga0066638_1123237	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	627	Open in IMG/M
Ga0066638_1124627	Not Available	622	Open in IMG/M
Ga0066638_1124769	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	622	Open in IMG/M
Ga0066638_1125902	Not Available	618	Open in IMG/M
Ga0066638_1138161	Not Available	582	Open in IMG/M
Ga0066638_1146002	Not Available	561	Open in IMG/M
Ga0066638_1161173	Not Available	525	Open in IMG/M
Ga0066638_1163791	Not Available	520	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0066638_1009426

All Organisms → cellular organisms → Archaea

2581

Open in IMG/M

Ga0066638_1012897

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon

2219

Open in IMG/M

Ga0066638_1036173

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense

1308

Open in IMG/M

Ga0066638_1091277

Not Available

759

Open in IMG/M

Ga0066638_1094132

Not Available

745

Open in IMG/M

Ga0066638_1098001

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense

726

Open in IMG/M

Ga0066638_1098876

All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae → Thermococcus → Thermococcus zilligii

722

Open in IMG/M

Ga0066638_1123237

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense

627

Open in IMG/M

Ga0066638_1124627

Not Available

622

Open in IMG/M

Ga0066638_1124769

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense

622

Open in IMG/M

Ga0066638_1125902

Not Available

618

Open in IMG/M

Ga0066638_1138161

Not Available

582

Open in IMG/M

Ga0066638_1146002

Not Available

561

Open in IMG/M

Ga0066638_1161173

Not Available

525

Open in IMG/M

Ga0066638_1163791

Not Available

520

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0066638_1009426	Ga0066638_10094264	F094578	MIKKERPKWPLQRLKGMYFAMHCWKCKKFELPVEEYKKGCEENIQKIIDNLGIKEMKFKEFNEIIKNSTFCKFEKRELEKRFKQVKETFAGNDKD
Ga0066638_1012897	Ga0066638_10128973	F094578	MDNKKERPKWPLQRLKSMYFAMHCWKCKKFELPVEEYKKRCEENIQKIINNLEIKEMKFKEFNEIIKNSTFCKFERREFNNNCPICKELRVPRLVD*
Ga0066638_1036173	Ga0066638_10361731	F002651	MKNICASVGAVPTTKKKEVEGEGGKYIRKENEVIFCLEEAPEY
Ga0066638_1091277	Ga0066638_10912771	F069687	MEELAKKIESILSQFITEELGNRLSQFALISLKEIILNEIKSYKPK
Ga0066638_1094132	Ga0066638_10941322	F102531	AGWTLGTYGGQTIPIQPQKTIAQINQEIDNLVARGVDELEAIRQVGSISIPNYATTPEQIAALRLADQARTADEILQCPYTWCRHNSAISDAILESRDYQPYRAAMTMQTTEGLSAGGHQTSAIIINGEPVFIDLTNNLIITGQQALEQVLINSEKQLTALEMIRLTTNNVWDVINLIPK
Ga0066638_1098001	Ga0066638_10980012	F004515	MVQTIRSETLLPGQKMILLEKPLVLNRIFFSIRALADQSAWYQSKVSFDDPLFSSFYVLNGPGKYFEARGEGIFQGDVWVFNASDQNLQYTATEILI*
Ga0066638_1098876	Ga0066638_10988761	F042954	MQDVRVRNGLYGFDFREVDLRRVEEEKERKTYNIKSLWQRSHEIINLAARGFKQTDIAEILGITPVCVSSTLNSELGQKKLSEIREFRDEEAKKTTEKIRVLTSKAIQTYHEIFDNEDGQATLKDRKGVADTVLLELSGLRAPTKIQSSSI
Ga0066638_1123237	Ga0066638_11232371	F010074	ITIHPTFITKNVECSWCGAKFNEKIYFRQKRMRCPSCMWGMNGSTVAEKFENETQIKEEINDIEIVQTDIEKMQKIQAYEIIPFRTGKADSLNAISMVNWIAEKKKKDRVITIQEKILANFSNISVNFIREYFFIYNHTIFSAMKYMNIGLREIRKDPRFIANAALKNTVLSEVKTACDELLLACQQSNEHITALKLPQNQT*
Ga0066638_1124627	Ga0066638_11246271	F039402	MSPLADYSNMEKEIKDAPEPRVLARGTEVKARIITVREGISEKNDAQWYQTVFDVPADLTALEFNDFFWDLADRDKLEPKNAARAMRKFKMFASAFSIDYTQPFSWTDDLIGRMGWLIVGIRKSEEYGDQNTVQKYLAKK*
Ga0066638_1124769	Ga0066638_11247692	F002651	MKNIGASVSAVPTQEQKAEVEEVEGEGKKYFRKENEVIFC
Ga0066638_1125902	Ga0066638_11259021	F002298	KASVGAVPTQEDKIKKGILNMTLKKIDNILEKSEDIDRMNLEFYAMVGKTCGPQTVFEQHRTTIKIDTFRRDIGKRWAENMRKREEIYEIIDMLYELTKNETENSDAERPKQMSWAEIRQKIQERMKKTLFR*
Ga0066638_1138161	Ga0066638_11381611	F014811	KTLKEYSTSSPRSKFYNYVSIEIEPIPGKPCIILVKKGMEEGRKPAQILEQLDIFKNLSVPSAT*
Ga0066638_1146002	Ga0066638_11460023	F001003	MEKYKKFTTENKKDFIFPHNLSAKEKDIYMYLFRLLREKINGGRYPEMDNGESIYSKSDMKSLIAKGIILFMPYKRGWVITIHPTFITKNVEC
Ga0066638_1161173	Ga0066638_11611731	F068209	LRKTSLNLSDIGRLTLRQFTDLLKEIYYQESVEEYRNQHAIASLLAAIYNTIPRKAGHVPLQAKDFLSGDMPTRDGRQPSPVDELARKKGIIIPNN*
Ga0066638_1163791	Ga0066638_11637912	F001003	MKTQKIMKKFKKFQIEYKKDFILPPNLFAKEKDIFVYLFQLLRKKIDRGIYPEVYNDEIIYTKSDLKSLISKGIILFARYKKGWVIT
Ga0066638_1164169	Ga0066638_11641692	F016358	MIIMQMTVIVNIAQASKSFAKQSPAIKYATLKMTTSKSDIFVLPEWLG*

Scaffold ID

Protein ID

Family

Sequence

Ga0066638_1009426

Ga0066638_10094264

F094578

MIKKERPKWPLQRLKGMYFAMHCWKCKKFELPVEEYKKGCEENIQKIIDNLGIKEMKFKEFNEIIKNSTFCKFEKRELEKRFKQVKETFAGNDKD

Ga0066638_1012897

Ga0066638_10128973

F094578

MDNKKERPKWPLQRLKSMYFAMHCWKCKKFELPVEEYKKRCEENIQKIINNLEIKEMKFKEFNEIIKNSTFCKFERREFNNNCPICKELRVPRLVD*

Ga0066638_1036173

Ga0066638_10361731

F002651

MKNICASVGAVPTTKKKEVEGEGGKYIRKENEVIFCLEEAPEY

Ga0066638_1091277

Ga0066638_10912771

F069687

MEELAKKIESILSQFITEELGNRLSQFALISLKEIILNEIKSYKPK

Ga0066638_1094132

Ga0066638_10941322

F102531

AGWTLGTYGGQTIPIQPQKTIAQINQEIDNLVARGVDELEAIRQVGSISIPNYATTPEQIAALRLADQARTADEILQCPYTWCRHNSAISDAILESRDYQPYRAAMTMQTTEGLSAGGHQTSAIIINGEPVFIDLTNNLIITGQQALEQVLINSEKQLTALEMIRLTTNNVWDVINLIPK

Ga0066638_1098001

Ga0066638_10980012

F004515

MVQTIRSETLLPGQKMILLEKPLVLNRIFFSIRALADQSAWYQSKVSFDDPLFSSFYVLNGPGKYFEARGEGIFQGDVWVFNASDQNLQYTATEILI*

Ga0066638_1098876

Ga0066638_10988761

F042954

MQDVRVRNGLYGFDFREVDLRRVEEEKERKTYNIKSLWQRSHEIINLAARGFKQTDIAEILGITPVCVSSTLNSELGQKKLSEIREFRDEEAKKTTEKIRVLTSKAIQTYHEIFDNEDGQATLKDRKGVADTVLLELSGLRAPTKIQSSSI

Ga0066638_1123237

Ga0066638_11232371

F010074

ITIHPTFITKNVECSWCGAKFNEKIYFRQKRMRCPSCMWGMNGSTVAEKFENETQIKEEINDIEIVQTDIEKMQKIQAYEIIPFRTGKADSLNAISMVNWIAEKKKKDRVITIQEKILANFSNISVNFIREYFFIYNHTIFSAMKYMNIGLREIRKDPRFIANAALKNTVLSEVKTACDELLLACQQSNEHITALKLPQNQT*

Ga0066638_1124627

Ga0066638_11246271

F039402

MSPLADYSNMEKEIKDAPEPRVLARGTEVKARIITVREGISEKNDAQWYQTVFDVPADLTALEFNDFFWDLADRDKLEPKNAARAMRKFKMFASAFSIDYTQPFSWTDDLIGRMGWLIVGIRKSEEYGDQNTVQKYLAKK*

Ga0066638_1124769

Ga0066638_11247692

F002651

MKNIGASVSAVPTQEQKAEVEEVEGEGKKYFRKENEVIFC

Ga0066638_1125902

Ga0066638_11259021

F002298

KASVGAVPTQEDKIKKGILNMTLKKIDNILEKSEDIDRMNLEFYAMVGKTCGPQTVFEQHRTTIKIDTFRRDIGKRWAENMRKREEIYEIIDMLYELTKNETENSDAERPKQMSWAEIRQKIQERMKKTLFR*

Ga0066638_1138161

Ga0066638_11381611

F014811

KTLKEYSTSSPRSKFYNYVSIEIEPIPGKPCIILVKKGMEEGRKPAQILEQLDIFKNLSVPSAT*

Ga0066638_1146002

Ga0066638_11460023

F001003

MEKYKKFTTENKKDFIFPHNLSAKEKDIYMYLFRLLREKINGGRYPEMDNGESIYSKSDMKSLIAKGIILFMPYKRGWVITIHPTFITKNVEC

Ga0066638_1161173

Ga0066638_11611731

F068209

LRKTSLNLSDIGRLTLRQFTDLLKEIYYQESVEEYRNQHAIASLLAAIYNTIPRKAGHVPLQAKDFLSGDMPTRDGRQPSPVDELARKKGIIIPNN*

Ga0066638_1163791

Ga0066638_11637912

F001003

MKTQKIMKKFKKFQIEYKKDFILPPNLFAKEKDIFVYLFQLLRKKIDRGIYPEVYNDEIIYTKSDLKSLISKGIILFARYKKGWVIT

Ga0066638_1164169

Ga0066638_11641692

F016358

MIIMQMTVIVNIAQASKSFAKQSPAIKYATLKMTTSKSDIFVLPEWLG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004142: Groundwater microbial communities from aquifer - Crystal Geyser CG09_land_8/20/14_0.10

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences