| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300004069 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0090290 | Gp0057564 | Ga0063354 |
| Sample Name | Combined assembly of 1362B_J2.571 and 1362A_J2.573 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 390457103 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 6 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Oceanic, Basalt-Hosted Subsurface Hydrothermal Fluid → Deep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Juan de Fuca Ridge flank, Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 47.76 | Long. (o) | -127.76 | Alt. (m) | N/A | Depth (m) | 454 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003647 | Metagenome / Metatranscriptome | 475 | Y |
| F008290 | Metagenome | 335 | Y |
| F024529 | Metagenome / Metatranscriptome | 205 | Y |
| F031707 | Metagenome / Metatranscriptome | 182 | N |
| F056895 | Metagenome / Metatranscriptome | 137 | Y |
| F062402 | Metagenome | 130 | Y |
| F077253 | Metagenome | 117 | Y |
| F087900 | Metagenome | 110 | N |
| F093835 | Metagenome / Metatranscriptome | 106 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0063354_1041454 | Not Available | 1079 | Open in IMG/M |
| Ga0063354_1052108 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 918 | Open in IMG/M |
| Ga0063354_1055640 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 879 | Open in IMG/M |
| Ga0063354_1059177 | Not Available | 842 | Open in IMG/M |
| Ga0063354_1069163 | Not Available | 755 | Open in IMG/M |
| Ga0063354_1079019 | Not Available | 690 | Open in IMG/M |
| Ga0063354_1085309 | Not Available | 655 | Open in IMG/M |
| Ga0063354_1101663 | Not Available | 584 | Open in IMG/M |
| Ga0063354_1121111 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 521 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0063354_1041454 | Ga0063354_10414542 | F077253 | MGEHEFLREIANDKQTPRQMRKVNTDGLFETTDCSEPDHICTCGSEQVTLTED* |
| Ga0063354_1052108 | Ga0063354_10521081 | F024529 | MFTSITSRQSFGATYQWAILSVLPMDDGDDGMTQDGMRPTDINAALGLPNEARTGLSMLLKVMAEQGLIKRHELGKRWVEYTRLVPLRNRERIARWVWQ* |
| Ga0063354_1055640 | Ga0063354_10556402 | F008290 | MPEKIRMKIRRAGYVQRVGDKDYIKVRSRIESVPMRKLAKLNRLGGRTWRLVQEGRDIFLVLEALTLEEEKEALKKEKYPKL* |
| Ga0063354_1059177 | Ga0063354_10591772 | F062402 | LAGSVAGLVASSLMIVCWFFRLRSALTEKGLKYTSKLGVLVWIMVLFMSVHVLLWKLGVIQKGGTFDSILMYTSATLNWIALVTVAVAMIFDAVKRRPTL* |
| Ga0063354_1069163 | Ga0063354_10691634 | F093835 | KAFDDFMNHAETEIDSYKKRKEAEDYTNKFFERKAAELEVTVDYYMQEFL* |
| Ga0063354_1079019 | Ga0063354_10790191 | F031707 | MAFLNWIQEATGCKVEDDRTGMIHTITGGKFLADSPMWPMIELTDETGVVRFATLDRFEEMISVG* |
| Ga0063354_1085309 | Ga0063354_10853091 | F056895 | MEMELKQIPKPHKTTNPKHREDYVFVEKPGEDFTALKLISGPFSSIVYKYGAVGFRPESEKRPDGTLPMQFDYDIIENKIDADIDSQ |
| Ga0063354_1101663 | Ga0063354_11016631 | F087900 | WHQYLQSFQEQVFVQQKINFYYCQVEDEDNHFPLAIARFTAYDQDHRPLSVEQVTYESDSNYFQRQVSAALSCGVDVSVITATPMEDFAWINQLSEHA* |
| Ga0063354_1121111 | Ga0063354_11211112 | F003647 | RASNKAFAKVTMLKLDIDDYKRSLINGTYGGITYEEAEQVLEGYKTELKVWNYITELIEKQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |