Sample 3300004023

Overview

Basic Information
IMG/M Taxon OID	3300004023 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101326 \| Ga0055441
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordA_D2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	704928689
Sequencing Scaffolds	80
Novel Protein Genes	84
Associated Families	67

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2
Not Available	36
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → unclassified Nitrospira → Nitrospira bacterium SG8_3	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus necator	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. PCC 7375	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense → Rhizobium mongolense USDA 1844	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas saliphila	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. C	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.003361	Long. (^o)	-122.468277	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000982	Metagenome / Metatranscriptome	814	Y
F004454	Metagenome / Metatranscriptome	437	Y
F004928	Metagenome / Metatranscriptome	418	Y
F005564	Metagenome / Metatranscriptome	396	Y
F005815	Metagenome / Metatranscriptome	389	Y
F009040	Metagenome / Metatranscriptome	324	Y
F011939	Metagenome / Metatranscriptome	285	Y
F012457	Metagenome	280	Y
F016540	Metagenome / Metatranscriptome	246	Y
F018004	Metagenome / Metatranscriptome	237	N
F018949	Metagenome / Metatranscriptome	232	Y
F021303	Metagenome / Metatranscriptome	219	Y
F023596	Metagenome	209	Y
F023895	Metagenome / Metatranscriptome	208	Y
F024115	Metagenome / Metatranscriptome	207	Y
F025653	Metagenome / Metatranscriptome	200	Y
F025922	Metagenome / Metatranscriptome	199	Y
F033929	Metagenome / Metatranscriptome	176	Y
F034234	Metagenome / Metatranscriptome	175	Y
F035220	Metagenome / Metatranscriptome	172	N
F035820	Metagenome / Metatranscriptome	171	Y
F036103	Metagenome / Metatranscriptome	170	Y
F037788	Metagenome / Metatranscriptome	167	Y
F040632	Metagenome / Metatranscriptome	161	Y
F042358	Metagenome / Metatranscriptome	158	Y
F042907	Metagenome / Metatranscriptome	157	Y
F042909	Metagenome	157	Y
F043801	Metagenome / Metatranscriptome	155	Y
F044979	Metagenome	153	N
F047064	Metagenome / Metatranscriptome	150	Y
F049002	Metagenome / Metatranscriptome	147	Y
F050381	Metagenome / Metatranscriptome	145	Y
F050382	Metagenome / Metatranscriptome	145	Y
F053305	Metagenome / Metatranscriptome	141	Y
F053659	Metagenome / Metatranscriptome	141	Y
F054044	Metagenome / Metatranscriptome	140	Y
F054877	Metagenome / Metatranscriptome	139	Y
F056621	Metagenome	137	Y
F058158	Metagenome / Metatranscriptome	135	Y
F059861	Metagenome	133	N
F059980	Metagenome / Metatranscriptome	133	Y
F059981	Metagenome / Metatranscriptome	133	Y
F060598	Metagenome / Metatranscriptome	132	Y
F070125	Metagenome / Metatranscriptome	123	N
F070131	Metagenome / Metatranscriptome	123	Y
F072365	Metagenome	121	Y
F074892	Metagenome / Metatranscriptome	119	Y
F074893	Metagenome / Metatranscriptome	119	Y
F076109	Metagenome	118	Y
F076890	Metagenome / Metatranscriptome	117	N
F076930	Metagenome	117	Y
F078220	Metagenome	116	Y
F078289	Metagenome / Metatranscriptome	116	N
F080659	Metagenome	115	Y
F080660	Metagenome	115	Y
F081352	Metagenome / Metatranscriptome	114	Y
F082886	Metagenome	113	Y
F085223	Metagenome / Metatranscriptome	111	Y
F085724	Metagenome	111	Y
F087210	Metagenome / Metatranscriptome	110	Y
F087211	Metagenome	110	Y
F087950	Metagenome / Metatranscriptome	110	Y
F087951	Metagenome	110	Y
F088283	Metagenome / Metatranscriptome	109	Y
F092076	Metagenome / Metatranscriptome	107	Y
F092304	Metagenome	107	Y
F103272	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0055441_10000389	All Organisms → cellular organisms → Bacteria	3832	Open in IMG/M
Ga0055441_10003738	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2142	Open in IMG/M
Ga0055441_10006454	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1841	Open in IMG/M
Ga0055441_10006735	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1819	Open in IMG/M
Ga0055441_10006899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1807	Open in IMG/M
Ga0055441_10006927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1806	Open in IMG/M
Ga0055441_10007148	All Organisms → cellular organisms → Bacteria	1789	Open in IMG/M
Ga0055441_10011077	Not Available	1567	Open in IMG/M
Ga0055441_10016930	All Organisms → cellular organisms → Bacteria → Proteobacteria	1371	Open in IMG/M
Ga0055441_10017864	Not Available	1347	Open in IMG/M
Ga0055441_10024390	Not Available	1218	Open in IMG/M
Ga0055441_10024959	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
Ga0055441_10025866	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1195	Open in IMG/M
Ga0055441_10026002	All Organisms → cellular organisms → Archaea → Euryarchaeota	1193	Open in IMG/M
Ga0055441_10026196	Not Available	1190	Open in IMG/M
Ga0055441_10027520	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1171	Open in IMG/M
Ga0055441_10029102	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1149	Open in IMG/M
Ga0055441_10029838	Not Available	1140	Open in IMG/M
Ga0055441_10034307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1087	Open in IMG/M
Ga0055441_10038794	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	1041	Open in IMG/M
Ga0055441_10043058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1005	Open in IMG/M
Ga0055441_10043665	Not Available	999	Open in IMG/M
Ga0055441_10044408	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	994	Open in IMG/M
Ga0055441_10046696	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	976	Open in IMG/M
Ga0055441_10047585	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	970	Open in IMG/M
Ga0055441_10049032	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	959	Open in IMG/M
Ga0055441_10050791	Not Available	947	Open in IMG/M
Ga0055441_10052560	Not Available	936	Open in IMG/M
Ga0055441_10054355	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
Ga0055441_10057579	Not Available	905	Open in IMG/M
Ga0055441_10057836	Not Available	904	Open in IMG/M
Ga0055441_10064520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	868	Open in IMG/M
Ga0055441_10065073	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
Ga0055441_10065460	Not Available	863	Open in IMG/M
Ga0055441_10066150	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	860	Open in IMG/M
Ga0055441_10066910	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	856	Open in IMG/M
Ga0055441_10070527	Not Available	840	Open in IMG/M
Ga0055441_10070928	Not Available	838	Open in IMG/M
Ga0055441_10074910	Not Available	821	Open in IMG/M
Ga0055441_10080243	Not Available	800	Open in IMG/M
Ga0055441_10080863	Not Available	798	Open in IMG/M
Ga0055441_10083761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	787	Open in IMG/M
Ga0055441_10088132	All Organisms → cellular organisms → Bacteria → Acidobacteria	772	Open in IMG/M
Ga0055441_10094111	Not Available	753	Open in IMG/M
Ga0055441_10095515	Not Available	749	Open in IMG/M
Ga0055441_10099792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	736	Open in IMG/M
Ga0055441_10109866	Not Available	709	Open in IMG/M
Ga0055441_10116026	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → unclassified Nitrospira → Nitrospira bacterium SG8_3	694	Open in IMG/M
Ga0055441_10116474	Not Available	693	Open in IMG/M
Ga0055441_10123177	Not Available	678	Open in IMG/M
Ga0055441_10123338	Not Available	677	Open in IMG/M
Ga0055441_10124747	Not Available	674	Open in IMG/M
Ga0055441_10132348	Not Available	658	Open in IMG/M
Ga0055441_10133591	Not Available	656	Open in IMG/M
Ga0055441_10134695	Not Available	654	Open in IMG/M
Ga0055441_10135729	All Organisms → cellular organisms → Bacteria → Proteobacteria	652	Open in IMG/M
Ga0055441_10139749	Not Available	644	Open in IMG/M
Ga0055441_10141353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus necator	641	Open in IMG/M
Ga0055441_10141791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	640	Open in IMG/M
Ga0055441_10151288	All Organisms → cellular organisms → Archaea	624	Open in IMG/M
Ga0055441_10157853	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
Ga0055441_10158037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. PCC 7375	612	Open in IMG/M
Ga0055441_10159045	Not Available	611	Open in IMG/M
Ga0055441_10163101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	605	Open in IMG/M
Ga0055441_10172871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense → Rhizobium mongolense USDA 1844	591	Open in IMG/M
Ga0055441_10181047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus	580	Open in IMG/M
Ga0055441_10181345	Not Available	579	Open in IMG/M
Ga0055441_10182419	Not Available	578	Open in IMG/M
Ga0055441_10187061	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
Ga0055441_10188603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas saliphila	570	Open in IMG/M
Ga0055441_10202811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. C	553	Open in IMG/M
Ga0055441_10208767	Not Available	546	Open in IMG/M
Ga0055441_10223477	Not Available	530	Open in IMG/M
Ga0055441_10230979	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	523	Open in IMG/M
Ga0055441_10235498	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	518	Open in IMG/M
Ga0055441_10239119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	515	Open in IMG/M
Ga0055441_10242217	Not Available	512	Open in IMG/M
Ga0055441_10245619	Not Available	508	Open in IMG/M
Ga0055441_10250515	Not Available	504	Open in IMG/M
Ga0055441_10253104	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0055441_10000389	Ga0055441_100003893	F021303	MNEVGSTGALVSVQADVLQHAAEFVELVYRQAPAEYRRLLDSERFRAELQRSGAFNHGKLYAYAEFCVFRREFGERFPEASGASCINAFSKLFLKNDISIHNLVEFVEGADDRTQLRLNSPNP*
Ga0055441_10003738	Ga0055441_100037381	F074892	MTAMTSKYVSIVLLGLLLSSCAERGENVYKSWVGPDRPNMAIVTLRLGDDVRDITVRERVLPRSEYGTLLLVPGQYTLYEDDGANIGITIRPVMMNTEKARASGELILGHTYILHAGKSKDGGERALWIEDARSGEVFIDTR*
Ga0055441_10004503	Ga0055441_100045032	F087210	MRFLMGVLALAGAETALAHTPDTGFLSNFGHQLTSLHHSPAAMLLGVLVLALLLVAVRALKTR*
Ga0055441_10006454	Ga0055441_100064542	F037788	MKQVKGLDFWVRSSIWWELIIPGYFFGKTFGTADAKYRFLDSFMYPQSFIALCGYFRDLPVGHYTARFLGVFIGAMIGVLFVLFIGVLYKWVLKDWAYSKATRIASLAFILIALMTGFMSDMFNESIGMALHIEEGVPDDLVGKFLVEDYGSFEKGTKITTQNASILSAYGTIKGNNPAGARRWWIASLIFMYAWFGLYFLCAHRLFKRNKVPRKDYFKLQVINVSIVIILLRMGFGISSAEYHFIVTRFQYLFGGV*
Ga0055441_10006735	Ga0055441_100067353	F056621	LNDKERFALAERIQKRIQEQNPYLRLIKRRDEIEKKLKEKNENRKS*
Ga0055441_10006899	Ga0055441_100068991	F049002	MAKTDLDEAQTELTRAIQKDAPCTFDEPIPVLVTLDNGVKYEGVAFEVQPQSTNFPRGLVMVRTGNTDIGVPVNYIRGR*
Ga0055441_10006927	Ga0055441_100069273	F000982	MPVLKLSSRASRLLDHHRLRGRSYPTARYWERLYQMLEEEAEKRGRTPPPPPFTHALDHEPTEQDKIDRLAEQVVWADRNTLLHRIQMFFDAMP
Ga0055441_10007148	Ga0055441_100071482	F070125	MTSADDRRRWIEALHAYRDDSERLFALVASLANLLDRTLVVETMESVLGVTAVHDGDCVIFDDFAIRFGSDDRVKSVFRTIDGSVKGD*
Ga0055441_10011077	Ga0055441_100110771	F074892	MAGMRLKFALIALLGFLLCGCAERGEGVYRTWVGPDRPSMAIVTLQLGEDVKDVTLRERVLPRSEYGTILLVPGTYTLYEHDGASIAITIRPALVTVERARANGELILGHTYRLRAGKSKDSGDRALWIEDARSGDVFIDTR*
Ga0055441_10016930	Ga0055441_100169301	F016540	MSQSLDAIPVLTDIVEDDLAAVATIDSTMLFLGELEAHLTAAIHEQADELVHNACREMEALLLEQVSDRLRAQLPALVARIVDEHFR
Ga0055441_10017864	Ga0055441_100178642	F053305	MYKKSLSLVLIAVFALSLIAVATLSAAETQKITGTVMSVNAETGEVIVKDDAGETKTLMADPKAEGAVDIKMLKEGDSVNVESDSDGVIKSIQAE*
Ga0055441_10024390	Ga0055441_100243902	F053305	MLKKSLSIVLTALFVFSFIAVGTVSAAEVKGEVVSVNAETGEMVIKDDAGEMKSLMADPKAVDLKMLKEGDMVSVESDDAGAVQSIKASE*
Ga0055441_10024959	Ga0055441_100249591	F088283	MKLKERALPCLLAVAAGCAADTNIAGKYTPSCVAFEGNTIELTESRFTWDKFTDEVTVDDDGNKVDPFPGFPVRGTYVVEDHIVRLVTDVGELAGEMHLVERPGQVYLLNGEEFAAWQRDGTVPRCALLLAAEE*
Ga0055441_10025866	Ga0055441_100258663	F042907	MTDEMRVEAEEKLFNDLRDEPCILCGDPYLHVLGSYTPEEPKRSKNREDRAPVLYYTLCRTCFNNGRIPTARIESAYKIKFGKKAA*
Ga0055441_10026002	Ga0055441_100260022	F043801	MAKKLTGICPCGFSFTTPHGEDDAVKVMQYHAELVHKKEYPNGATKEEAMKYIKEVE*
Ga0055441_10026196	Ga0055441_100261962	F050381	MKKIIVIIAIILIPAVAFANFSLQLDNNTGKKMLYMLYWVDHTYDWPYPFHLAGGELKASETIDLKSSYQNGKYFVVWSDKGDWQNKVMMNVNNDVKSVVVTPIKSSMTK*
Ga0055441_10027520	Ga0055441_100275201	F078289	MKKTVIILVSLFIVFPLYGFNSLVRHEDIPKMRELGISQEVIQYFISNQTSSVSSEDVIKMKQSGLKNADIMSAIKSDLYRPEQKSSAMKEAELVAKLKESGMSDEAVLQFIQTVKSTRRVDSDGNVTKQHTNETQRTQYPTTGATFPKPDNYGYDPLNGRFLLLVKPQNQ*
Ga0055441_10029102	Ga0055441_100291021	F076109	AIIFRGLLIMEVFFNILFVISVMASIFCLCIFLGNLYILFQKNEFPDIEDV*
Ga0055441_10029838	Ga0055441_100298381	F053305	MLKKSLSMVLVGLFVFSFIAVATLSAQDTQKITGTVMSINVETGEVIVKDDAGEMKTLMADPKAEGAVDIKMLKEGDPVSVESDSNGVIKSLEAAE*
Ga0055441_10034307	Ga0055441_100343072	F088283	MKTRALILLTSLGVFSGCATGSDVTGSYSPSCVAFEGNTIELSENRFTWDKFTDEVTVDDTGNEVDPFPGFPVRGVYAIEDDVVSLTTDVGELAAELYIVRRPGQVYLLTESEFEAWQKDSTVPDCALLLGSGE*
Ga0055441_10035919	Ga0055441_100359193	F087210	MRFLIAVLALAGAGTALAHTPDTGFLGNFGHQLTSLHHSPA
Ga0055441_10038794	Ga0055441_100387942	F040632	MGNQTNPTRDQQHELEDIRDPMSVPDMVHVVISTREEELLWAVFDGFSELSSVRVTGCSTLPQTRQICAADPPNYLIIDMALLENEPMDLITLANLSDCQSHIVALTDHPVFEIGARFGKARLTFLQKPVSAHDLLLLLRLRIVDDAEEHADVC*
Ga0055441_10043058	Ga0055441_100430583	F070125	TPCSGPLTSSGNAYPVTTAEERRQWIEALQAYRDDSERLFALVASLANLLDEEMVVETMESVLGIVAVHDNDCVIFNDLAIRFGSDGRVKSVFRTIDGSGNGT*
Ga0055441_10043665	Ga0055441_100436652	F076930	MRDKPITEMTQRAYDLGFRRGYEIANRTPIDPSISKDEFVKMVLETARNSLESTVFESISAELESMNTKYPAFDGWTVFAEGVMQGAGENFLDRTGNQE*
Ga0055441_10044408	Ga0055441_100444081	F087950	MQCWINGPAGGIDDKIQMANILLKTNIPTFHHSIIPFRGKFGSTKKPL
Ga0055441_10046696	Ga0055441_100466961	F024115	MQLTLPKILWFVAALGLAWGINQWRQQAAAHVLAAAQEGDRDAAESWVDRALRESQCELHEASDYLASEATRQYVRRPGYVETFVDKLYAGGAARLELCESDALGFRFAHYLVVTLPDDTSKHEQVIADAQSMVRRDAVVYRGVTSAEVEEIVRSSTLVGTRRVLVDLPVEAD*
Ga0055441_10047585	Ga0055441_100475852	F056621	MSKKEKLDLAERVQKRIQEKHPHFRLIKRRDEIENELKVENENR*
Ga0055441_10049032	Ga0055441_100490322	F078220	LDFESGDGGVYNIFEAVVDVVHGEKRKKMVFAKCINCGKLSPFRPKSNSMQLNALYCKHCGSIISFGTRGKDPKLGESAEIFCENCQDDCRKCQINKIANENLRKKRRIRR*
Ga0055441_10050791	Ga0055441_100507913	F054877	MKPTKSLRVLARFCPKTTDDLEPELSNLVGTEAVFSYYKYVDEDDTPYSDQWVLMAEDQRFGDYWYPECDLKILQEMHSA*
Ga0055441_10052560	Ga0055441_100525601	F070131	MMGKMLTKISIIGVLAFCFLMQVDLAGGDNRIYGQNKKKSNVPMEIELHFSSTPLLNEYTVLNVEIRSLKDAPNTLIDIKLPSDGFKLISGDTQLNEDLSSGSTTIYQIEVLPAALGQYKISASAISGETDYIFGKREELYVNIGEEFSELSKSSFIPEIADNRSGATKIGNFSEPPAEVLPDQKPIEGQEDLYLAAPGPGEIVVKGYWLYQDKGGADQPLRDARVEIWDADSSGDTLLDTTYTSDSGYYASGNISNSDDEGGGQDIYVKVFSTDNRSVRVTDFSTPGKLYYSATPVQN
Ga0055441_10054355	Ga0055441_100543552	F033929	MPSADFCPAVKLPLNSFSRQSDTEQISWGKFSCLPCTVAESTLRTLDGYGLCSTSPARPVLAPYIRFLSIDSHV*
Ga0055441_10057176	Ga0055441_100571761	F044979	LSDLLFPDDIKIDFSNLEEFAVRRRPTPYELYKVIQNKEAAEAIGWNVDAVIDAIRFHRAFSEHNKSREDFFRTISESGFNWSLSVNQKIDLYEIYWREFDGKISKAVVLQDYNPIITEINKTARGNNKISEETIRDQHGFLQLQVGAYDDWSEVLYMLTDSVGSGLFHDIKSQAEAAYVACRQYDFTMNGLVDAVRLNSMLMIEGQSPDATKMLKQMEWLPISVMPDGAKFTQNRFQLPVGESMGFMQFYMNDLYRNLGQYRIGQPGAGGKQRTKGEAELDAAESAKLSGTQIRRFNECET
Ga0055441_10057579	Ga0055441_100575791	F074893	MASSQLHAVAGNGSLTIRISGPMDLLLTMPLREHCQNTGVDYLRYIVDFQDVSIVRDSGLALLLMLKRWANRAGATLCVINGNRDLMRRCFLLGI
Ga0055441_10057836	Ga0055441_100578361	F060598	SRIVDLVKGKIGNTGRILKAEELVLAYDLDAHLWVGLRAYHGTKKLSKGLVEIVRELLEHRGSLKGLLRLFFDKGGYGGRIFLALSQEPRVRFYVPAVRYPSNVAQWEKLQDSDFDANPFTFDKHADWPVEQRPVYRLADTEMTLNVWKESKVVDTVTLRAVALHNPQAEKPAERWPVVLLTDDDENDARALLNEYGDHWGQETAHRIGKHDLYLDVLPPGYILKTRRDDQGQLHREIEFDQTAFFLSAWLRCLVFNLMSRFAQELGGKYVKMWAGTLLRKFIRRPATLYLVGKELHVVF
Ga0055441_10064520	Ga0055441_100645202	F085223	MSIAEAKPKRENRTITLHLGNTLAEYEASYLTEAGIQAVIGKVEIADSLNWGCLATGHKPGCPRQSRFTHHDSYSRWAKHFDGTRSLVTILRVRCLDCDAVFSVQPALIIRYKRYETDAVEKLMTLLFITEDSYRMAGVSQALGLDTQQAGTWLALEGENSRAIQPMALWGLVQWLGQLSPAQLNLALGVDPPHHIIEDEKHTKECDQ
Ga0055441_10065073	Ga0055441_100650732	F088283	MNSKTLALLCSLAVAAGCAADTNIAGTYEPSCIAFEGNTIELSDNRFTWDKFTDEVTVDNDGNKIDPFPGFPVRGTYVVEDDVVRLVTDVGELAGEMHLVRRPDQVYLLTGAEFESWQRDKAVPTCALLLGPGE*
Ga0055441_10065460	Ga0055441_100654601	F081352	MFSANVSLMIRLIRKISAITLTCLLALNLAAGAVVVVEHCPSSMASSSPIDMSHCDGLLNFAFPIQGCCGKCGDIFCDLIKNPLQDANVVKPSPFQGSCYPFFLGTVDPIAESGAWIGLSEPKNLFSGTLAWSQIPLYIENLTLVI*
Ga0055441_10066150	Ga0055441_100661501	F011939	MTEKTINMIEEALRKEVQKIDKSVQVVAVEQGKKKNFYRVTLLKEGKSASADLQKDLIEQHLAQKGQGRRLRKALAKAVSHLSIRYGR*
Ga0055441_10066910	Ga0055441_100669102	F047064	MNTIEIKASRSWRREVIEYFEDLEIICDDYNRMALRYLGKLNRLLHEKQIDQSEYDALNKRLLHASEALNHIPKTILDLK*
Ga0055441_10070527	Ga0055441_100705271	F076930	MMEKPIDEPTKRASHLGFRQGYEVANRTQIDESLRKDEFVDIVLETVIDSLKSTVFEAISAELDLMNEKYPAFDSWKVFADAVIQGAGE
Ga0055441_10070928	Ga0055441_100709281	F070131	VFTFCFLLQVDLAQGDNIIKPQNKKKSNVPMEIELIFSSVPMLNERAVLDVEIRALKDAPNTLIDIELPRDGFKLISGYTQLNEDLSSGSTTIYQLEVLPVALGQYKIAASATSGGTDYIFGKREALYVNIGDGFSELSKTSFKSELTGHRSAAIKIGDLSELPTHVPSDQKPMEERESLYFAAPGPGQIAVKGYWFYQDKDGVDQPLRDAKVEIWDSDASGDTLLETTYTDNSGYYASGNISNNDSEGGGQDIYVKVFATDDRSVRVTDFSSSSKLYY
Ga0055441_10074910	Ga0055441_100749102	F058158	MDQIMIEKKKSYKSDFTKTEKADVDIWELSAEKRAHILNQITKSARNNRIRNWLELIFMLSFIYYMLYDMYKDGDLDTIIKFLKT*
Ga0055441_10080243	Ga0055441_100802432	F036103	LKRWNNVIRILGIATCLVSAYLMAFGEPIIGADHAGIATVVGITGIGMISTGNMLSFARKKKEDQ*
Ga0055441_10080863	Ga0055441_100808631	F025922	MARNRIIYASQSVWCNGEVLYRVQSLGSTTTFTSEDIFELGHLDIIDVVDDVPAVAVTLNTNDFGDVSTLATLAQVAPAKKLMSATADTDNGNLVVVSGTNLVETSTFLHGVALADFAIVCGNLPGVSIWAPVQDECSLGTLANNIDQSLFIDECYVNSLEFSYTTGANATENYGAETDNKMWLLNDGRFINWEAWTANSANGALDSAD
Ga0055441_10083761	Ga0055441_100837611	F034234	PGAEGSTPLVTALLRDAQGIMELRRLRPDTSLLRKARLAGRLNCGKPILDPRTREVIGCEIEPIPLPAT*
Ga0055441_10088132	Ga0055441_100881322	F035820	LLAKLKSLTNLRAVPDETSTTGWKIEIGSLPSWEKVPTW*
Ga0055441_10094111	Ga0055441_100941112	F072365	MGEQQKECRECGWRGSAAELDETSDASTGKTHVFCPACGGVAIEDLKHD
Ga0055441_10095515	Ga0055441_100955151	F053305	MLKKSLSIVLVALFVISFIAVATLSAEEGKITGTVMSVNVETGEMVVKDDAGEMKSLIADPKAGVDLKMLKEGDPVSVESDANGVIKSLEVSK*
Ga0055441_10099792	Ga0055441_100997921	F004928	MSQALHRIESEPNHIVEIVVHITETLGEQQRGDLVVALEGIGGIATAEFCPLRYHLMLVRYDRDLYSSQDVLERVTSHDVRARLIGPV*
Ga0055441_10109866	Ga0055441_101098662	F054044	MNCRKSDTLINLPADRLGISSLVGILVLAFAITALFLLFLDSSFRSAAEQEECLELVRALGLNSLSLVPSGRPLRNPGTNDPSIDLRFDPKLGQIPLDGADLVLKVSD*
Ga0055441_10116026	Ga0055441_101160262	F085724	MRTLLIGMIVLGMTAVYEPGSIIPKYFVDKTPQGEYRVYDSKQIVVPKYIVKPDRWGNGYRVYETGKPVLPVYRI
Ga0055441_10116474	Ga0055441_101164742	F023596	MTSKSLQILLFSSAVVIALLFLKLMFDMSRSMSEMTGYVGSMSQDVREMQNSMRTMNDSIVRMENSVHVLGQAFNQGSKQIQQMNPSGMMEQMLPGSGQRTR*
Ga0055441_10123177	Ga0055441_101231771	F070125	VTSAEQRLQWIEALHAYRDDSERLFGLVANLANLLDHTLVVETMESVLGITAEHDGDCVIFDDLAIRFGSDDRVKSVFRTIGGPGSGN*
Ga0055441_10123338	Ga0055441_101233382	F004454	MDKQRRTVIEVRADLHKQIRKLALLNDLRIYALANAIIEETLKDPEKTNALLKTLKLNEPC*
Ga0055441_10124747	Ga0055441_101247471	F082886	MNVAGARGITRSRVPIIAMLALAATIGLAGCEGDDSKDDVA
Ga0055441_10132348	Ga0055441_101323482	F005564	MNKIFFALLIIFFVGDPGLETLSWLGDMKIYVVAAAVALCSMPFIASQLDG*
Ga0055441_10133591	Ga0055441_101335911	F018004	MGTVSTLDRNAEQVRDVLRSLLEQCEAGNICGAVIVTEHLDGFGLDMPGTFSTDPDSIASITGRLQM
Ga0055441_10134695	Ga0055441_101346951	F023895	MNEQKDLAVEPRPAGAGDDTPADVRKPKFGAASEGWEAYNTWLDRVRQQGGAPTSRQAVISKALYSLSSYKNWADKARGAFDEGK*
Ga0055441_10135729	Ga0055441_101357292	F005815	MTMNVTRLRTYWTTDEAATAIDFLDNLRDVLWETYGEQIIQMHREVHDEELRERNQGEFMFDDDIF*
Ga0055441_10139749	Ga0055441_101397491	F087951	MSENENVIDRELFLEKFEKMSLKIEQLTLEISKMREKLNKTNKINRGFGLKAIRNSKPLTFAREIYGLRSPTKQYILSIRTVSEVWKGRKNDFLIAIRQQENETHMDLKALGIRIPIDDMKNLTTLAKEVLSMLYISSELKGIEVTEILREIVSQINKDGQSMVREIKQNMELQ*
Ga0055441_10141353	Ga0055441_101413531	F012457	MMIKDLEMSKDLDRDALSAVRGGNSIVQNGIIAPVSNASGNGFSFASPTTIVSTPVSVQTATLNDNDLDLDIATKTANVV
Ga0055441_10141791	Ga0055441_101417912	F088283	MKNRVLLFVPFLAACAGCATDADVAGMYVPSCVAFEGNTIELTDQRFTWDKFTDEVTVDAAGNEVDPFPGFPVRGTYTIENDVLHLTTDVGDLAALLHLVRRPGQVYLLTVTEFEAWQKGGTVPNCALLLGAGE*
Ga0055441_10151288	Ga0055441_101512881	F092304	MLKKEDVKQRLECEVRESLEHKLVLRREAALIGLVAFSVALWGSKLFTAASPGTSVVFQIWGFNVHFHHFNYGFILLITGLLLTFFEGPWCVRVQHSLFGVGLGLIVDEYWLLLIFDDHSSTYFGPESQYISTMIGLAITIIYAVIAFGVFFKSRREIKIWKQLHEAVKTGEIDIHVKPNSVSE*
Ga0055441_10157853	Ga0055441_101578531	F050382	IPNYNIQISNKIKNQLFGFLNFNHCDLFGIWVLLFEISYLLTPET*
Ga0055441_10158037	Ga0055441_101580371	F053659	MESINQSEQKRQNRTVTLHLGNTLAEYKAMILTEGGIQTLIRRVEIADSLNWGPLANGHHPGCPRLLHFTHHDSYVRGAKHFDGRQSEITLFRVRCLDCEAVFTIQPSFIVRYKRYDTDALEKFMVLLFITEDSYRMAGISQALGMDTQQAGTWAALEEATGDT
Ga0055441_10159045	Ga0055441_101590452	F080660	MPDKKRSREEFEAYLKPMSNQDYPKVNYSNPDAWRIRASKEKQT
Ga0055441_10163101	Ga0055441_101631012	F053659	VNIDQAKPKRQKRTITLYLGNTLAEYEATYLTETGLKTLIRRVEIADSLDWGCLATGHEAGCPRQLHFTHHDSYNRWAKHFNGSQSMVVIYRVRCLDCGA
Ga0055441_10172871	Ga0055441_101728712	F009040	KPLQAAVVKSDGGERCRNAGAKIPAGTVEGGERKRTTAEASKAD*
Ga0055441_10178738	Ga0055441_101787381	F076890	MGALGTSACSTLEVDDYCRYSETRSIREADPESLALLLGVKAGYETLTPFVVVRSLSESRPGASVTLHTTPAAHPMPIGLDESRCARVDWNTYTLTVDPAEWNAFWQDDTNSPFEIGIAFLEGFHPLPLSAFGASILDSDSADSLVSCGCFWR*
Ga0055441_10181047	Ga0055441_101810471	F092076	MFTHKIDKLQGIIFARVSGTPTTVLMIDHIQNVLNDPDFDPKYNSIIVFEENTRIAGFPKDEIETIRHILDGYAQQRTGRNWAVVAPNERQEAFLKLNLELISPVKFNIRIFQSEEDALNWIKGR*
Ga0055441_10181345	Ga0055441_101813452	F043801	LADKYTGICPCGFSFTTPAGKDDAVAVMKYHADLQHKKEYPKGATTEEAMKYIKKA*
Ga0055441_10182419	Ga0055441_101824191	F081352	FSRIYYDPRLMFLADVSLVIRLIRKISTITLACLLVLNVAAGAAVVVEHCPTLLGSSSPMDIDHCDGMLNFAFPMQGCCGECNDIFCDLIKNPLQDANAVNASPFQGSCYPFFLGTVDPIAESGTWVASSAPRYLFFAALAWSQIPLYIENLALII*
Ga0055441_10187061	Ga0055441_101870611	F087211	DEMIHVLKVTANALEGDEEIRQPLIVFVKCEDEGGAYAPADAHLRQTGWQNVELVNCKAVPKEAIEKLDESLQNAYREAEAHGVAAVLLKSS*
Ga0055441_10188603	Ga0055441_101886032	F018949	MSDSSALPDWLRGDPVAEDLHARGLAVTRAAWLEAAYGSSNETLLLFDKETREWVRRHFP
Ga0055441_10202811	Ga0055441_102028111	F042358	MKNEEQFSIYMALDGPHLDGLIGSAGIMRFDWPEREFYIQHYEGISAAHNVSLAPNGKLALLGNFSQQIVLLDVSNPQAMKLMARQATQYFEECPYRLRANTHHLWYPDNERFIGAIGDDLYRFHVDNLKEPEQIGPHYLFNAHEIRWD
Ga0055441_10208767	Ga0055441_102087672	F025653	MSDPINYFETKLKGLCLAELQTYKKRLDESITKKIAETAPNEQIAPLILYRGILEHEMKTRMSQK*
Ga0055441_10223477	Ga0055441_102234772	F035220	GTIYLLHIPSLSWVDAKDWGFVEFEGAGPWRWLQGRDAFETTYGWYGNLACLARNAHGSITGYTDTARYTHVA*
Ga0055441_10230979	Ga0055441_102309791	F059980	ACTMGFSGGFEQGKPETALPELRRFIPVNMKWVNPQNKFCYG*
Ga0055441_10235498	Ga0055441_102354982	F059981	MDPETIICIFCGAIAKVKEKGDMMIVSCPRCKRETEVDEYQKIFNKWLGDIRNKDGEE*
Ga0055441_10239119	Ga0055441_102391191	F080659	LDLIMQYRLGIAMMGLAVIAIGLLARPIAPEWSAHNRSALAMMVIGGIVLILLPTLAAAIVGG*
Ga0055441_10242217	Ga0055441_102422171	F088283	MKTKALFLYPLLAACAGCAADADVVGTYVPSCVAYEGNTIELSGQRFTWDKFTDEVMVDDAGNKLDPFPGFPVRGSYAIEDDVLRLTTDVGELAGELYLVRRPGQIYLLTEAEFGAWQKDGAVPDCALLLGAG
Ga0055441_10245619	Ga0055441_102456191	F059861	VNKFYDEDLPYGEAGEMFVLDIINRKHSMAYKTEGNFSEYDIMIPEIEKTVEVKRDKHSDRTGNVFIETYCNKIESGINASTADYWAYLTKSMLYWIKSSDLKICILENNIPEGKNYMIDGKIIDAYLIPIDIF
Ga0055441_10250515	Ga0055441_102505151	F103272	MNYLTDREKELIKYKKQYLNLVYKITRLQLSGEDPPEELLKKAQEIGHTAKIPEMFLKSILLSLW*
Ga0055441_10253104	Ga0055441_102531041	F042909	MVELLNFIGSLNLWTFIIIWTSTIFLVIFISLLLFSVRQMNKETIKISEKVKILIEELSKKKLKLGNHDNKFF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004023: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordA_D2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences