Sample 3300004005

3300004005: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D2

Overview

Basic Information
IMG/M Taxon OID	3300004005 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101333 \| Ga0055448
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	972358201
Sequencing Scaffolds	72
Novel Protein Genes	75
Associated Families	65

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	19
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiothrix	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
Not Available	20
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → Acidisoma cellulosilyticum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia → Rhodothermales → unclassified Rhodothermales → Rhodothermales bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio nitratireducens	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.015041	Long. (^o)	-122.501831	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002568	Metagenome / Metatranscriptome	547	Y
F003255	Metagenome / Metatranscriptome	497	Y
F004928	Metagenome / Metatranscriptome	418	Y
F005815	Metagenome / Metatranscriptome	389	Y
F008223	Metagenome / Metatranscriptome	337	Y
F008710	Metagenome / Metatranscriptome	329	Y
F009707	Metagenome / Metatranscriptome	314	Y
F013096	Metagenome / Metatranscriptome	274	Y
F015245	Metagenome / Metatranscriptome	256	Y
F016971	Metagenome / Metatranscriptome	243	Y
F017250	Metagenome / Metatranscriptome	242	Y
F018371	Metagenome / Metatranscriptome	235	Y
F019205	Metagenome / Metatranscriptome	231	Y
F020059	Metagenome / Metatranscriptome	226	Y
F020378	Metagenome / Metatranscriptome	224	Y
F021486	Metagenome / Metatranscriptome	218	Y
F021573	Metagenome	218	Y
F022938	Metagenome / Metatranscriptome	212	Y
F024115	Metagenome / Metatranscriptome	207	Y
F025809	Metagenome	200	Y
F033541	Metagenome / Metatranscriptome	177	N
F034232	Metagenome / Metatranscriptome	175	Y
F034932	Metagenome / Metatranscriptome	173	Y
F035989	Metagenome	171	Y
F036417	Metagenome / Metatranscriptome	170	Y
F039145	Metagenome / Metatranscriptome	164	Y
F040218	Metagenome	162	N
F040773	Metagenome	161	Y
F041083	Metagenome	160	Y
F042907	Metagenome / Metatranscriptome	157	Y
F045104	Metagenome / Metatranscriptome	153	Y
F045766	Metagenome	152	Y
F045770	Metagenome / Metatranscriptome	152	Y
F047517	Metagenome	149	Y
F047712	Metagenome	149	Y
F047891	Metagenome	149	Y
F049899	Metagenome	146	N
F051273	Metagenome / Metatranscriptome	144	N
F054071	Metagenome / Metatranscriptome	140	Y
F054878	Metagenome	139	N
F054999	Metagenome / Metatranscriptome	139	Y
F061158	Metagenome / Metatranscriptome	132	Y
F062769	Metagenome / Metatranscriptome	130	Y
F064729	Metagenome	128	Y
F066517	Metagenome	126	Y
F069741	Metagenome / Metatranscriptome	123	Y
F071910	Metagenome	121	Y
F072045	Metagenome / Metatranscriptome	121	Y
F075739	Metagenome / Metatranscriptome	118	Y
F076224	Metagenome	118	Y
F076390	Metagenome / Metatranscriptome	118	Y
F077315	Metagenome / Metatranscriptome	117	Y
F082105	Metagenome / Metatranscriptome	113	Y
F086537	Metagenome / Metatranscriptome	110	Y
F086605	Metagenome	110	Y
F093160	Metagenome / Metatranscriptome	106	Y
F093892	Metagenome	106	Y
F094484	Metagenome	106	Y
F098275	Metagenome / Metatranscriptome	104	Y
F099777	Metagenome / Metatranscriptome	103	N
F102142	Metagenome / Metatranscriptome	102	Y
F102144	Metagenome	102	Y
F104552	Metagenome / Metatranscriptome	100	Y
F105195	Metagenome	100	Y
F105528	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0055448_10000276	All Organisms → cellular organisms → Bacteria	12780	Open in IMG/M
Ga0055448_10001070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	7567	Open in IMG/M
Ga0055448_10013407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2666	Open in IMG/M
Ga0055448_10020347	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
Ga0055448_10029056	All Organisms → cellular organisms → Bacteria	1903	Open in IMG/M
Ga0055448_10029619	All Organisms → cellular organisms → Bacteria	1886	Open in IMG/M
Ga0055448_10041495	All Organisms → cellular organisms → Bacteria → Proteobacteria	1622	Open in IMG/M
Ga0055448_10041626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1620	Open in IMG/M
Ga0055448_10047623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1525	Open in IMG/M
Ga0055448_10052774	All Organisms → cellular organisms → Bacteria	1457	Open in IMG/M
Ga0055448_10069143	All Organisms → cellular organisms → Bacteria	1291	Open in IMG/M
Ga0055448_10069564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1287	Open in IMG/M
Ga0055448_10075660	All Organisms → cellular organisms → Bacteria → Proteobacteria	1239	Open in IMG/M
Ga0055448_10077784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiothrix	1223	Open in IMG/M
Ga0055448_10088318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1154	Open in IMG/M
Ga0055448_10097159	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
Ga0055448_10101626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1081	Open in IMG/M
Ga0055448_10103989	Not Available	1069	Open in IMG/M
Ga0055448_10106195	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
Ga0055448_10111736	Not Available	1034	Open in IMG/M
Ga0055448_10115064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1020	Open in IMG/M
Ga0055448_10115105	Not Available	1020	Open in IMG/M
Ga0055448_10128823	Not Available	967	Open in IMG/M
Ga0055448_10129590	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
Ga0055448_10130931	Not Available	959	Open in IMG/M
Ga0055448_10132118	Not Available	955	Open in IMG/M
Ga0055448_10154603	All Organisms → cellular organisms → Bacteria → FCB group	885	Open in IMG/M
Ga0055448_10164482	All Organisms → cellular organisms → Bacteria → Proteobacteria	859	Open in IMG/M
Ga0055448_10165557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	856	Open in IMG/M
Ga0055448_10173921	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
Ga0055448_10178281	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
Ga0055448_10182122	Not Available	817	Open in IMG/M
Ga0055448_10185197	All Organisms → cellular organisms → Bacteria → Proteobacteria	810	Open in IMG/M
Ga0055448_10188403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	803	Open in IMG/M
Ga0055448_10191309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	797	Open in IMG/M
Ga0055448_10192996	Not Available	794	Open in IMG/M
Ga0055448_10201016	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
Ga0055448_10209879	Not Available	761	Open in IMG/M
Ga0055448_10228464	Not Available	730	Open in IMG/M
Ga0055448_10229301	Not Available	728	Open in IMG/M
Ga0055448_10230423	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
Ga0055448_10236533	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
Ga0055448_10236582	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
Ga0055448_10240790	Not Available	711	Open in IMG/M
Ga0055448_10244985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	705	Open in IMG/M
Ga0055448_10246029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	703	Open in IMG/M
Ga0055448_10264357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → Acidisoma cellulosilyticum	678	Open in IMG/M
Ga0055448_10267211	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia → Rhodothermales → unclassified Rhodothermales → Rhodothermales bacterium	674	Open in IMG/M
Ga0055448_10270876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	669	Open in IMG/M
Ga0055448_10278661	Not Available	660	Open in IMG/M
Ga0055448_10283851	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	653	Open in IMG/M
Ga0055448_10292574	Not Available	643	Open in IMG/M
Ga0055448_10309957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028	625	Open in IMG/M
Ga0055448_10317863	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
Ga0055448_10328371	Not Available	607	Open in IMG/M
Ga0055448_10334591	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
Ga0055448_10339091	Not Available	597	Open in IMG/M
Ga0055448_10343508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	592	Open in IMG/M
Ga0055448_10344195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	592	Open in IMG/M
Ga0055448_10350794	Not Available	586	Open in IMG/M
Ga0055448_10364139	Not Available	575	Open in IMG/M
Ga0055448_10369761	All Organisms → cellular organisms → Bacteria → Terrabacteria group	570	Open in IMG/M
Ga0055448_10387458	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
Ga0055448_10393817	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	551	Open in IMG/M
Ga0055448_10396951	Not Available	549	Open in IMG/M
Ga0055448_10401421	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
Ga0055448_10407271	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia → Rhodothermales → unclassified Rhodothermales → Rhodothermales bacterium	542	Open in IMG/M
Ga0055448_10407683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio nitratireducens	541	Open in IMG/M
Ga0055448_10417158	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
Ga0055448_10436511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028	521	Open in IMG/M
Ga0055448_10458284	Not Available	507	Open in IMG/M
Ga0055448_10467560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0055448_10000276	Ga0055448_100002767	F036417	MVYFASTPLRNLIPTVRVHLDTEDGEIAFHARWRSSPLDLQRLILFRMRRGHPIWFEDDRGHDLCFRPEAVRAAMVDGRTGIS*
Ga0055448_10001070	Ga0055448_100010703	F017250	VKHSALSTIPTPEKPALSDEQRAERLRLLADRLRRPDGLDRDTLKHVEQLTDTER*
Ga0055448_10013407	Ga0055448_100134073	F008223	SFQSGVQSHAPCASIRDPGEKCGLAAMGWFGRLFAKKPRKPGAADEINGILARYTTATIMGVDREDLGRYPAKQYKVMAFHYGAIEYLAHQHGLDETQTLGIFVAFIDRYFNMPVNETGSISERLQGFRDNADERRFLEAGIDVFRRWHEQNERRAPLVLGEMLKDA*
Ga0055448_10020347	Ga0055448_100203476	F086605	MVDPWKHGTVNPVYSDVDNYFYPIAVGIAGGECGAAKSVASV
Ga0055448_10029056	Ga0055448_100290563	F039145	MNNFLMSLLLPLILLTGCSREGVQAPLELSAFIEELQGNGVDGTLTIRGPVNEDMEYVAEYAISRYASTRIISLFKCKDAEKAAANLAEALKNPKLSGQASNGTFIMAATFYPPDDEAVEKIKVLFLAHEFE*
Ga0055448_10029619	Ga0055448_100296192	F098275	MAAQPKKRPLMAPGNEAEWTRINEEKREALTPPPGTPIGVLLRRGQRLSAQGAKLLRAVERADGHSRS*
Ga0055448_10041495	Ga0055448_100414952	F086537	VHAGLIREAALSDDETGSGELLTHWLKEAGRRAQSKAQAGDAADGDDTYNSPASLHRYLEELAGRKLQTHAQVLEFLKEAAGSQPQGYREHERRRMVREVVLIVVLALSYLHFYFWEVQLQIAALNSVNVFVPAPQSKTRKTQS*
Ga0055448_10041626	Ga0055448_100416261	F047712	VNEQQPYRMIIRHSIIALSPTATFTLRFDQIGDVFPPGMIGNDIHPRALGNLCAFAKDVNCTVAKDDKAKAFVFIKRN*
Ga0055448_10047623	Ga0055448_100476233	F021486	MARIPQERLDAVRKYLLGDFPDWALAERWDDDQEAHTFLLKKPREPVYLLKVSRAVLDDCGPRKLAGLLEGHQVAYALRKAAKHRLMLTARGLAPL*
Ga0055448_10052774	Ga0055448_100527743	F008223	VSLLGKLFGTRPPVDTPVDTVRCIIDRFTTATHAGVDAEDIGRYPHKQRKVMAFHFGAIEYLADKHGLDETGELGVFVMFLDKYFNLPVQETGSISDLLEGFRTNLDEQEYLEAGIDVFRRWHELDDRRAPLQLGEMLQRR*
Ga0055448_10069143	Ga0055448_100691432	F069741	LENITFDVDELSRLNRMEQAQRLEEAARRIDEVQRAAADDPDSLTWVEQQRQYLVDMQHLIFEC*
Ga0055448_10069564	Ga0055448_100695642	F094484	MKTLVFGVLFAGAMLATGQAAESEGRRMIVFTLFGPEGTTGSTATTTVIDFTTQVACREARDELRRNARAPGFGIYATCVEP*
Ga0055448_10075660	Ga0055448_100756603	F064729	MSELSEWIKYWRKTFAKCFKIHKDSRPHKQAYAELSDYLNKVEASAEQEQLDATVLWAVKFMQRMHELERDIGLLVPDKKVSSAKPAGDGRKTKR*
Ga0055448_10077784	Ga0055448_100777842	F045766	MGESEEKLERVIARMQAIQRAIKSSGQPASLFELQELKELGREYARVIDSLSDSPDGSSQH*
Ga0055448_10088318	Ga0055448_100883182	F066517	MPNGIRSIPMSPAERLDEVARLLALGCLRLRARRRAEKTNDPNHLREFGLDLRGEGSVCDTDTHADRERR*
Ga0055448_10097159	Ga0055448_100971593	F051273	ISAPMRRLFPALVVVALVFGASHAGSLIYWVMGPWNATAVKQDGSFSHMQFGQNLPRPEWVPIYPGAWTVQSSAVNSQRAPSGFHSLEIATRAPLEDVKRFYTEWLKAAGFEVVDLATMSLNPATAALLELDGALRPTT*
Ga0055448_10101626	Ga0055448_101016261	F082105	MFIARMAAPTMHEPLRCAEQPNATAQLAVAGTVMRIDSVDSGRVNEKK*
Ga0055448_10103989	Ga0055448_101039892	F042907	MAEELLMEPQEAFYNDLRDEPCILCGDPYLYVLGSYMPEKPERVANRKEKAPVLYYTLCKKCFNNGRIPTARIEAAYRGKFGKLAA*
Ga0055448_10106195	Ga0055448_101061951	F025809	VLAPTPAIEPETDLAREVTPAPEAELEPEPPVEAFVAAGDDWQLGNALPLVEVRGHGALVMRRADERWALADVTTAPDFVVEVDVDFRSGPGLGVLFRASVDEAGRMSGYSFDIDPIYDGGGYLVRQWQADRELWNPIARVGAVDPSSMYGMLTVRLVVVDDRLVALVNGVEVLQVDNLKQTSTDQGREAATGDRVGIQAWSSSDLVIDTLRVAGF*
Ga0055448_10111736	Ga0055448_101117361	F013096	MLVSCGGDRAVGLSTLSQTNAVTSNEPEFSGIHDKAGLNDCPGDNEPVIQASETV
Ga0055448_10115064	Ga0055448_101150642	F049899	GGGLRGSVAATIVGALFLTYLGQLVLAVGFETSAQNIVQAIIIIASVGVIEAGRRIRIEWIRFKFWVTSKDVEFRISTTASRFMAATGLAKIIQISPELRTKWSVAYRRLKKRLEITE*
Ga0055448_10115105	Ga0055448_101151051	F102142	ENIMSNEIRLNEIQQERNFDKTLSDVFKAGLVGILAVLITVIPFEQFIAQIVGVSYAEFRGGMPALYLVPLFLIYAAMALVFANMKKNLYISKRGAFLIILVFHYFIVSFLPDLEGKIYLPDFTFFSAMISGFILALAVVSLIFYLWKQEDRPEARTGQQIKSYFSSRSILSWVWRFFLVWILFYVVTMIIGIVSLPFNGKYLDDAANTLGMVVPSMGALFAITQFRSLIYILVTLPFIMFWRSSKKNLLLYLALILIIQYPLLGDGLAYFWPGMYRLTDGIVLALQVSIMSWLYVALLWKGQKT*
Ga0055448_10128823	Ga0055448_101288232	F104552	MMVCRASTLFLSRLAYYQLWTLLLLGLLVPAQAAEALKPDALPQAQATLERLEQQLATARTANAQELKTLRKEVATVRSTAQDCLQQAEPKIEILDSELAILQPDKPKDTQKKTAQETQPAEQPEAPVSPAIAGQLQELLSSKASLEGRIAICKLLLLKSNYLESNVDDYLRSVQTRQLLARGPTLVSVLQANLDERKQWLDFTSQLAMTSTGWDAIRPIHLAGASAVGLLGFILGRIVPRRLRVRAARMKVGEEE
Ga0055448_10129590	Ga0055448_101295902	F003255	MPIFVAIHRLKDFDAWLKVFKANPLPKVGRWRLTRGVDDPNRVHVVGEVEPSDVKEVKAFLASDRMQEAFRRVNAMSTAPVEFVLLEEVEP*
Ga0055448_10130931	Ga0055448_101309312	F020378	MRKYLIAAALTAAFVTPALAEQFYVVFDPASHKCEAMHNIPSGMKSMGTYGSMDEAKKAMAGMKECG*
Ga0055448_10130931	Ga0055448_101309313	F022938	MQDAGQIIPQLNPLQLLFIELRVGLARSAIQSSLLLNGGAAVALLLLLGNILSSPAQRSLLVDVAQLKWAFALFGTGLFLGGITFVNAYIAQGALASGQSSAFGNTVRRLGLALIVASLLLFLAGLGLVLAAI*
Ga0055448_10132118	Ga0055448_101321181	F016971	ELPVDARNAVEIVVYIRNHLGDEQRGHVVSTLEKIDGIIGAEFCPLRNHLVLARYNKNIFSSQDVLKSFNALNLEARLIGPI*
Ga0055448_10154603	Ga0055448_101546031	F076224	IKEFTLKLKYDSTFKFYAEMKNGQPFTVAFDSNICRVDIPNFAVSEVPIPEIAAIDPLIEQATNNIHFYAYKIPKIEKSKSEIKIEYYNDDSVYSYVVNYNTLNIDSLVQANAGTDLYNLENFKPVKPSDDTMLIKYQIDRNYFHKYYSDDEFKKQMEELQKQLQELSRDLQNKKIRVHTEVTKSPGK*
Ga0055448_10164482	Ga0055448_101644822	F005815	MSMNTTRLTTYWTLAEAATAIDFLDTLRDALWETYGEQITTMHREVYDARIQDTNQRELEFDDDIPF*
Ga0055448_10165557	Ga0055448_101655572	F047712	MSDQYPYRMLMRRSIIDLAPGGTWELRFDQIGDVFPPGMVGEAIHPKALSDMLAFAADVGCSITKDNASRAFVFRKHD*
Ga0055448_10173921	Ga0055448_101739212	F035989	MTPEDIHHLRKIGRAAAGGTDYFGSFAEVRGAHYRRGYDGELFYILAAEVIEAVHRATGDTQRLPWTDLDGRAVNRPGKD
Ga0055448_10178281	Ga0055448_101782812	F054071	MHTRIPKLIAEINTIIADHSSCDVVEEQEAIDLLKRARHTLGLARVKLQQSDVKKNQLASGRANPP
Ga0055448_10182122	Ga0055448_101821223	F102144	MVSLKEMWNPSQIRIEAHNIEGHLQKTTQRLMRLERQYRLKKLEYLACIEAYEERLKWVTAEME*
Ga0055448_10185197	Ga0055448_101851972	F105528	LADIGYRVNDRTDIGAEVFWMPTETTSGHIHVTHIDAVAQFRPWSSQGFFVKGGAGIAFLRNWVDVIGPSATRQKALSVVIGAGWEFRPTGRLGLQIFGTQHVGAIGDVRTADVVVDNVVGNFWSLGAAVVIR*
Ga0055448_10188403	Ga0055448_101884032	F049899	TVIGALFLTYLGQLVLAVGFETSAQNIVQAIIIIASVGLIEIGRRIKFEWIKFKFWITKPDVEFRIRTTYLRFMAATGLEKIIVFSPETKTRWHGRYLRLKKRLDITP*
Ga0055448_10191309	Ga0055448_101913093	F033541	VFKAKAESVYGRLMAKTIAQALRQVATKSRCPTCGHETHSTLGEMKRQPQFACPACGGERDVREAVAWVEVHARRTWMKRVA*
Ga0055448_10192996	Ga0055448_101929962	F018371	MDYSNIIKPKRLTDMQEMEVHVNGPEGANRLFMHSGMAEVEIRGGLPHPRWTLEVVCFEVGRTYDLSEESIININASAALAGGRMDGVASFAGWQIFGAAGELDNESRRVRMNIAAGARDTQAFLEQISFQVNILARVKE*
Ga0055448_10201016	Ga0055448_102010162	F105195	MTVLLVWPLVDLHSPRIITSDKHVIDLLETDPTIWVKQISEENKQRVVAEVQRWETAVEAGADATEAYGYAVEGIGVDFQTWLVKEKESYSS*
Ga0055448_10209879	Ga0055448_102098792	F040773	MYIGLGVFAILAVVVVIAGAIAMKRQRDYGNSDGEGEMGEAEFRKYEGFDD*
Ga0055448_10228464	Ga0055448_102284641	F045770	MADLTADAYLRIWGEATTQRWVLDNSAAQTIYKGQPMILDISEDTVYVRGFVDATTVAADDIFIGIAAEGATVATTDTETDNELNIYVEPTIVGFPGSVFTDADVGDTMYMSDSATLSATAADNPMIGKLVRVEGGFQYVRLSSPTVTTGA*
Ga0055448_10229301	Ga0055448_102293011	F061158	DVIADGEKIAERGGNWLTRSFGVGYPNLDSVVDELERRQA*
Ga0055448_10230423	Ga0055448_102304231	F020059	MTKPDPTLAQIAAQFTRHSVEKSGGAYLILDRPTANAIARLRPIPGTDRFELFYTPFTP*
Ga0055448_10236533	Ga0055448_102365331	F034232	MAKRVSAREPYERPRVFKIKVVSGEMAVTGCKTRTTRGGPTVGCQRGNCRTFGS*
Ga0055448_10236582	Ga0055448_102365821	F002568	MRNPPILISVIGFFAALAGFAHLFFGLRVLGFDWFGALGDLPAFESVGIWGWMAIGMAVLWLLIAFGLWALQPWAWLTAVIIAGFSLFEAFIAFFQFPGSGVGFGMAILPVVILLYLNSASVKAAFGVG
Ga0055448_10240790	Ga0055448_102407902	F102144	DIQRIRAEADSIEDNLQKTTRKLMNLERRYRLKKMEFLARIEAYEERLKWLSAEME*
Ga0055448_10244985	Ga0055448_102449851	F016971	QTIHAEGIMNQVARNLPIQEQRAVEVVVYISKDLGDEQRDLVVSALEKTNGIIGAEFCQTRNHLVLAKYDKDIMSSQDVLRSFNTLKLEAKLVGPI*
Ga0055448_10246029	Ga0055448_102460292	F039145	MNKLLMYIVTTLILLSACSQQGVQAPPELSAFIEALQENGMDGYLTLRGPVNEDMEYVAEYTIAKYSSTRIISLFKCKDAEKAAANLAEALKNTKLSGQASNGTFIMAATFYPPDEKA
Ga0055448_10264357	Ga0055448_102643572	F076390	MVYAIFMLLTLVTLAANWLRHPLQLPLFIVTVVWMAVHLVLDMTTPLTLSF*
Ga0055448_10267211	Ga0055448_102672112	F003255	MPTFMAIHHLKDFDTWLELFKSNPPPKIGRWRLTRGIDDRNCAIVIGEVSPSQVDEVKAFLASDRMQEVFRRANEMSTKPTEFIALEDVEP*
Ga0055448_10270876	Ga0055448_102708762	F034932	MKRIRVEGESPDRIVGFVAGVEWVNDSAITVVDLDCSRPTAFVVLEDEDGSGEDEDLRLTLDGFEAKE*
Ga0055448_10278661	Ga0055448_102786611	F093160	ESACHGIDDEAEEADKMAVDPAGNVYIIDDRYRVAKINGQTDKVVEVLAIPGFDCERSVPDGSEVLLRNTANNIAYMAHGQGKLYVISEQNTLTLIKWKKKGKKTIPTLTTLTIPGAVELDAPTTDPALNRVYITDESLTALWILKGACANGVGRHCVLR*
Ga0055448_10283851	Ga0055448_102838511	F015245	EECRQLFAKVPGSNRLVEIMFGYHPKASIQHGIVDPMHWELISKMPWVGLGTDRKNPTFRHVDGSVMNGRLYIDDRIMVHEQGMLDRSFLHDPEVLEVASEYGDPYQVLAPVSHEAHGSGTLW*
Ga0055448_10292574	Ga0055448_102925742	F062769	MTDLSTFSAWLTSATRSAILVVRARVYRARERYPELRSEANALLKRITQELAARGEYDRRCLV*
Ga0055448_10309957	Ga0055448_103099571	F077315	MAICKASTLFLSRFVCCQVWALLLLLGLLVPVQAAEALEPDALPQAQATLGRLEEQLATARTATAQELKILRKEIATVRSTAQDCLQQAEPRIEILDSELAILQPEPPKDTRAKTAEEPQPAEQPKAPVSSAIARQLQDLQSRKA
Ga0055448_10317863	Ga0055448_103178632	F047517	MLKALRQHSLLIGMAEVLADAVRYVAVVLVVLVIFGQVVAALGS*
Ga0055448_10328371	Ga0055448_103283711	F045104	APSSNAPALCGLWSGPRRSAAVLIDPVTQRQSPISLANTEQARGALLAWLAERSAQLVIPDTLLGQPFLNQASHAPVVVWIAPSPLLEAIRLATGLTTRAPKQTAALLARWPTAPALRPFLRRLAASRSPDQLSLL*
Ga0055448_10334591	Ga0055448_103345912	F008710	MKSMRRIFLILTLLLPVTVLVSSASYAESKLAATIFSYDGSDFVRTET
Ga0055448_10339091	Ga0055448_103390912	F071910	MRRIVIAALVVALLGAFGLALGLSAADAVERAVERRTASVERALSL*
Ga0055448_10343508	Ga0055448_103435081	F047891	MPNIVLTKLRRDFLAAISSDQNDVTLDPAIAELRDTISNAGFIEPFSIFSRGQLREIDDALSIISTVRLKDDPLQVALAVDAILKLFDRLE
Ga0055448_10344195	Ga0055448_103441951	F041083	AVLLVRKLIALLSEQERQDLAQAFLLGDAANPTYKGFKSMFWAVERLDVSPALVSYLNTEVAGQLRGMSQQAIFGSWVEGQIGGVMSRLRERCLEEAEFNADLWQ*
Ga0055448_10347837	Ga0055448_103478371	F099777	MHRLPRWIVGTVASLLGLGLLLVRRGFWASGGTVVEGAEGMRAVLIAIRTEPALLVYGAIVFFLLVGFALLIPRSRWEKWVTGHKQRKSANHRTDR*
Ga0055448_10350794	Ga0055448_103507942	F075739	MDARELADFVEALAEAEKLIGSTAAVIQRAKARCHEEIFEHVDVISKRLSELRVRSEWLRLVALGVIEPSTSPELKGRQSADRRVAIDRRVTGMRKQLQAHAAKSRKTA*
Ga0055448_10361624	Ga0055448_103616241	F040218	SGTQLQEQRMKPYFVYFEGAPGLLARDYAKFPNKVLWKLAEKVRNVVAAGKVVRIEDDLGTHLTATYDGSRLYGMQFRAGDPPGRCHFPWGRCGVFNGSGKADGEVYLSCVQGVAGRLPAPMRWKIKDSEVIEAEGGELAEECRQLFAKVPGSNRLVEIMFGYHPKASIQHGVVDPMHWELISKMPWVGLG
Ga0055448_10364139	Ga0055448_103641391	F093892	MIFLSKYQNNQLAEPVKIKTSPFRNLDRICILIEEVFTREKSIERKTYFCKPVV*
Ga0055448_10369761	Ga0055448_103697611	F054999	VTIIEDIRFPGPDEIEWFWAFDKMHAPRPIHPLSQDLIMDTIGRGFTRAQAEYDCPVVVDTKALNHYFYVSFHPHPDPAVIEDRMTRYEAAIAEKVPVVGHRWVNEWLPMIRTRNEAERDVDYKAMSDQELMAKLADMTDWMEEMWYVHGHINFALLSGAALSDMYVEVMQPEDPTESYQIL
Ga0055448_10387458	Ga0055448_103874581	F072045	MPQLHVRKPNEAPPPSRSSKAVREQQEKYDNFIRGIDTNDVGDLELDPGENVRSVKVRLRRASSRLNSDIDIWDVNGHVYFRKVTRRGRPRKQA*
Ga0055448_10393817	Ga0055448_103938171	F024115	VQLTLPRILWFVGAIAIAWGLNAWLREAASQGLEAAQQGDRTAAESWVDRALREGECELHEARQYLQSPATRQYVRRPDYVESFVEKLYAGGAPKLEICDSDLVGFRFAHYLLVTLPEDRGQQEQVIADAQSFVRRDAVVYRGVSSNEVEAIVRDST
Ga0055448_10396951	Ga0055448_103969512	F054878	MTDLLKKFSAAAETVKSNNRPVRACVYGAYREHLADINPDDLPDNIQIIYESVKDRLTSVQPKGDIGEDEAGYLAKDILHMADVVKTIYKMP*
Ga0055448_10401421	Ga0055448_104014212	F021573	PDILEKNCHSTCPKSMIETTRMYNPNMKVEILAIPPRRDPGDVCCKWRFSMRDEHDPEYVPVELSTPRDRSQDSAD*
Ga0055448_10407271	Ga0055448_104072712	F003255	MPVTVAIHHLKDFDAWLNIFKENPPPPVGRWRMLRGTDDRNRVHIVGELAASEVKTVKDFLASERMQDVFRRVNAISTAPIEFVWLEEQTP*
Ga0055448_10407683	Ga0055448_104076831	F004928	MEQAIHNLETEPAHTVEIVVHISESLDEQQRANLVTRLNSNAGIVAAEFCPLRYHLVLIRYDTDLYSSQEVLDRVKSQNVTARLIGPI*
Ga0055448_10417158	Ga0055448_104171582	F009707	GLDHMTEQSDRNTGTEWSKKDLFSLRNRIEHGRTVTHLAAFLMRSEAEVRAKAAELGLTLPTVPPSVEPQQ*
Ga0055448_10436511	Ga0055448_104365111	F077315	MVIYQASTLFLSRLACRQVWALLLLGLLIPAQAAEAVKPDALPQAQATLERLEKQFATARTATAQELKTLRKEIATVRSSAQDCLQQAEPKIEILDSELAILQPAKPKVTQAKTAQETQPAEQPEAPVSPAIARQLQDL
Ga0055448_10458284	Ga0055448_104582841	F105195	MTVLLIWPLMDLHSPCIITPDKHMIDLLETDPATWVNQISEENKRRVIAEVQRWQTAVEAGADATEAYGYAVGGINLDFQTWLAKERESCSG*
Ga0055448_10467560	Ga0055448_104675602	F019205	MFDTKKNFSTRAADAADLVIDFATLGEYGLEPVPPTAPACEGRRRSGTMRSTGAWRSAIDRFATHA*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004005: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences