| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003951 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111355 | Gp0109926 | Ga0064030 |
| Sample Name | Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_80_12L10 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Marine Biological Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 1332117 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus | 1 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Anemone diffuse flow vent, Axial seamount | |||||||
| Coordinates | Lat. (o) | 45.933 | Long. (o) | -130.014 | Alt. (m) | N/A | Depth (m) | 1542 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019998 | Metagenome / Metatranscriptome | 226 | N |
| F025488 | Metagenome / Metatranscriptome | 201 | N |
| F051069 | Metagenome / Metatranscriptome | 144 | N |
| F082613 | Metagenome / Metatranscriptome | 113 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0064030_10722 | All Organisms → cellular organisms → Bacteria | 1070 | Open in IMG/M |
| Ga0064030_11559 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus | 592 | Open in IMG/M |
| Ga0064030_12093 | Not Available | 1112 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0064030_10722 | Ga0064030_107221 | F051069 | MAYRVSISSTELVTRAEVVAYAKIENTDENSIIDALITSSREELENLLKIPLITQVWAQTYDSFIEPVYAPMIPLTSAALEIADSDGNFSANTYISVKKDTGRIAPTDAFSPSLQFDGFKITFTYTVSAIDAALKTAIMELTSYRFYNRGNLEAAKIPASVLSMVGHLRVFSV* |
| Ga0064030_11559 | Ga0064030_115591 | F019998 | TSGVPSAYACLETDYRQNSLSVAATAGASSITLTDAVEYIAGDYIGIASDSNGLMWYKVNTVVGQVVNLYEVGTTTAASLDYAASVDAIVVGFTTLVWQPLRIIEARRVDLSSGIEVPSMIVGKFDYERIPNKAMTSIPLWLYAQTKIAETQVFVWPPTAYANWAIGYSFERRYQDVDSGINSMDFPPEAYESLRYG |
| Ga0064030_12093 | Ga0064030_120931 | F082613 | TNSISLSQAVVGVAALTQTGTYGVNGFPSELAWNITITSSANISAVNLTIVYLDAQLTQQSIVVAGPNATTKDAGIYATKIISVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTVDTREIGVRLKFNSWSSGNVRLDLSVSAKG* |
| Ga0064030_12511 | Ga0064030_125111 | F025488 | MAYVSRGFIPQTSLASNLGFTRPMYIPAGNGTATALYDIVKVSTSGSTVDTAGVPAGLMGCVRVSDKDDVPCGVIVGFIADPDYLNQTYRSASTARVALVNYDPQVVLEAQEDDNGTTLAVARIGTPVDLVPGSIDTVTGTSGMQIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |