NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003942

3300003942: Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome, Counting Only)



Overview

Basic Information
IMG/M Taxon OID3300003942 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0053071 | Gp0061218 | Ga0063831
Sample NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome, Counting Only)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size5730575
Sequencing Scaffolds28
Novel Protein Genes33
Associated Families32

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available21
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA41
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA71

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePeatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomepeatlandpeat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001953Metagenome / Metatranscriptome612Y
F003877Metagenome / Metatranscriptome464Y
F005410Metagenome / Metatranscriptome401Y
F011567Metagenome / Metatranscriptome289Y
F015068Metagenome / Metatranscriptome257Y
F017604Metagenome / Metatranscriptome239Y
F017774Metagenome / Metatranscriptome238N
F018180Metagenome / Metatranscriptome236Y
F020652Metagenome / Metatranscriptome222Y
F026497Metagenome / Metatranscriptome197Y
F028444Metagenome / Metatranscriptome191Y
F031390Metagenome / Metatranscriptome182Y
F032561Metagenome / Metatranscriptome179Y
F037359Metagenome / Metatranscriptome168N
F038498Metagenome / Metatranscriptome165Y
F038548Metagenome / Metatranscriptome165N
F042778Metatranscriptome157Y
F045277Metagenome / Metatranscriptome153N
F059236Metagenome / Metatranscriptome134N
F060662Metagenome / Metatranscriptome132Y
F066372Metagenome / Metatranscriptome126N
F068527Metagenome / Metatranscriptome124N
F074509Metatranscriptome119N
F076696Metagenome / Metatranscriptome117N
F078329Metagenome / Metatranscriptome116Y
F088037Metagenome / Metatranscriptome109N
F088420Metatranscriptome109N
F096460Metagenome / Metatranscriptome104N
F096779Metatranscriptome104N
F100491Metatranscriptome102Y
F102254Metagenome / Metatranscriptome101N
F106054Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0006864_100068Not Available617Open in IMG/M
Ga0006864_100091Not Available584Open in IMG/M
Ga0006864_100151All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4584Open in IMG/M
Ga0006864_100185Not Available546Open in IMG/M
Ga0006864_100299Not Available580Open in IMG/M
Ga0006864_100390Not Available808Open in IMG/M
Ga0006864_100542Not Available577Open in IMG/M
Ga0006864_100673Not Available791Open in IMG/M
Ga0006864_100763Not Available579Open in IMG/M
Ga0006864_100932Not Available808Open in IMG/M
Ga0006864_101179Not Available665Open in IMG/M
Ga0006864_101406All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068790Open in IMG/M
Ga0006864_101519Not Available694Open in IMG/M
Ga0006864_101540Not Available585Open in IMG/M
Ga0006864_101860Not Available796Open in IMG/M
Ga0006864_101993All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes608Open in IMG/M
Ga0006864_102276All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus695Open in IMG/M
Ga0006864_102554Not Available1158Open in IMG/M
Ga0006864_102840Not Available592Open in IMG/M
Ga0006864_102911Not Available766Open in IMG/M
Ga0006864_103079Not Available573Open in IMG/M
Ga0006864_103570All Organisms → cellular organisms → Bacteria867Open in IMG/M
Ga0006864_103627Not Available705Open in IMG/M
Ga0006864_103682All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium537Open in IMG/M
Ga0006864_103986Not Available759Open in IMG/M
Ga0006864_104708Not Available579Open in IMG/M
Ga0006864_106483Not Available876Open in IMG/M
Ga0006864_108288All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7527Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0006864_100068Ga0006864_1000681F015068FEEQQASEDVADLER*SAAETLVIGTSDRSWQIETGGGERKEIGRSRKAGRKTANPAERFDPEGGKSPKGEWRLEERSSSKPWRLQRARSIEAAQTGANRTG*
Ga0006864_100091Ga0006864_1000911F005410SK*PIQQFSFLPACTVEAAQSG*SCDLALLLPATEFRPSRINAPDRASQLTPDRNPSLGTTFRSLETTARYRATFPRSKLLAYPFGSTLRSRRTRSITPLLHAVRLAPNSANSTRATRCPVPSKRPRLFSNSPLPLGVFTPLPIKAFKLTTSREAHRIETPDLPRSPLRPVFNIQQRINVPDSLRPVRLIV*
Ga0006864_100097Ga0006864_1000971F100491MVPSDRLAACSPTGMHGQNVASGIGET*APCSPPLVLANRGSVRRCVSAVHPGRSPFLDATFRSTAPRTGLATDPRNCVNVPGLHLRNDPQI*SDPFGATLPPPFSLFVTSRGAIYARNPLPDPTSGLIARIRTSAPLRDLSIPRDQSPQPGFEL*NLPLQVARSSFAPRCAVTILVITQRYGSSFQIRYFLPGSLSFE
Ga0006864_100151Ga0006864_1001511F042778SK*SSDQPSPPPACTVLSCATRSAGRFARLLPTNRFHRSADQRFRTRRNQISRSGPDTRDGLSLPCNGHRFRGNHSSFEAPDLPLRIPACRFHCPFGLSAPLPDPVRPGLRPLRCFRPVAASPACRAHVSSSLHSPSGVLPPSGSKRSTGFPVRRSAFRIRPIPLAPRSRLPSLVFRLRIIVPGPLRFRRLAVP
Ga0006864_100185Ga0006864_1001851F068527WRFNLDDQVVQPAVASPGYPSGEPAAFAAVPSSGCADALLSACAYLPALRLDRRPTSPARIGVFSPGSTGGKHPARTVCYALPADWLPTSQLTLVSSLQLGLRLLPTHIWRRPSARLARTTFGSRRRLLQLPACAFRCCNSPACAGCCPHLPNRW*
Ga0006864_100299Ga0006864_1002991F011567MLRCMSASLFPIEARFSMQPFALRRRGPILRLDPVTGSTLLAYIFKAILKPTPQPVRLQTPVPVRPFYCRARYDPRLKPVAEAKLPDFLPVFEPPLPSRTFLSFGIKALNPTPFRSACLGESPDLPSLPVSRKCLTIAARRINVPDPLLPVR
Ga0006864_100390Ga0006864_1003901F059236MSLRQVSFGKEEETRTLKPFVETLRVRIPPGKAGPAARSESCVVVGRPILRSVDSEVKGRVIEPRKYKTPGAFVVDTGGGRVRQLTHGPLSLPDPAGVEEHGQ*
Ga0006864_100542Ga0006864_1005421F038548PALLTAGMHRTEHCVQERRVLRCSAPLKPLSPAPGSMPSSAPQPSTSSPQRDRPLVTAFRSPATAAPLSASIPGSKLLACYFTPAPTGFLARSAFPLHHRPRFAPVAAGFFASGPLRLRLLAPPAGSATSTPLSGSYTRPDRSVQLFLPPFGPPSEPARFPLAPRRSLSFKVPATDQRSRFATFPEACCSSN
Ga0006864_100673Ga0006864_1006732F017604MSKGCAETAGDTSDDNPDPESPWKRRGQAARKGGRERGSDDEETGSPTRRDTGDGSAEDQGRSQDYSPAGEVAWN
Ga0006864_100763Ga0006864_1007631F076696RRPSGSARSPAVMPGRNAAGMPLADSFSCSPPQLLFCVGLTLQSASADRHTRSLCLATAFRSPPRLRPFGRLHEGSMFPACRFGSLPNPASGPFGSPLPASLRFCLAYAGPIHAAFPLPDADLDFPDRYSASAPLQDVSRRFNASASASLEGSPLPATRFPFAPRCRLRFTIARFGSSFPVRLRLLGLLFLL
Ga0006864_100932Ga0006864_1009321F032561ILMNSQYRRCCILRLPQRPTLQLSLVVASSWLRRTENPRLSSVALDSGSTGGQLSVSDRRCIVQLDRLRTSDSRRLFRASGRPAAILFDSRRTISPPARPTINLRLASAPSFGSAGSTSGSRRLLFLPPGWLNLRFASAVSPSSFTDREPLNFR*
Ga0006864_101179Ga0006864_1011791F074509LSRLGSAFHRSARPVANLRFASAVARFRSTGGDPSDLRRTILPPARPATNFRLAPGVDPSARLVSSLRLSPAAVATCQLALTAAATSSLRLLSPVCHTGGEPPTRIGCSSSSFTGFDSPDLRRMFLPPAGPLMHPLLQPNLASAAEPPMSIPYPPVRAPSGSASLTTSDLRRLLQCLARPAIPLRLSPQVSPSGWAGVDFPILIGFSFRQPFRQPTPNALQ
Ga0006864_101406Ga0006864_1014061F001953DPPPVLRAPTNRRIQKMKKLGLLLLPILAITLMLGGNAFAQPAPGDGSYYFVTYYSNANTSGAPDGTLRIINDGDQATASPEGVENGTLWAAIYVFDDSQEMQTCCACVITSDGLLSESVNKELVNLNINITGRGEVQRGTIKVISSSNGNEFSPAPLTGLRGWMTHIQATTNGIPTTPGGPDGSKGPWFVTETALADSNLSGTELANLGETCSFGRTLGSGYGFCLCTPEDYDF*
Ga0006864_101519Ga0006864_1015191F060662DPGPGDRARRRRRAQEMKHIIGTVLRVVGCLVLLFVGLALLAGKDDIRKFRRMRRM*
Ga0006864_101540Ga0006864_1015401F088037FQVTHLTAALHPGMPG*RHRKQNRWAFCFSAPRFACFSRNESVPQSATCVAVLFGADISKGLSLAPGGFLLPSCRWKVNAPGYFLQRPAEASIKPVRLTASPLSSVCPVLGGIIAISPLPDFVPAFLAATRSPLPSGDFYVPLRIAAFDSACRSKAHLFELPDFPSLPAGHSLLNDQPPDHRSRIATSHQVRLF
Ga0006864_101860Ga0006864_1018601F017774HRESLDAQYKAGIRTIEEAFKVAEAKDPQQFRRLTEELWKHSFECLKTVAEAQTRDVQAAMQKFYEVASKSTSGLKV*
Ga0006864_101993Ga0006864_1019932F059236MSLRQASSGKEEETRTPKPFIEILRVRIPPGKAGPAARSESCVAVGRPTLRSVDSQVKGRVIEPRKLKTRGAFVLDISGGRVRQLTHGPLSLPDPAGVEEHGQ*
Ga0006864_102088Ga0006864_1020881F096779LDNSKYSRCCILRLPQWPAFQLSLVAASSGCAGFRTSDLRRLSCIRLDRWPTPRLGSALYPSARPAANLRLSPAVPRFRPTIGDPSTRVERSSSGKADDQPPTRLGCRPLARLAAQSRLTPTVAPASPAGYASGLHRLLHPPALPAVNRSTCVARSHPPAEPLMHSLLQSNLASPDKPSMSIRSSAGPCILRNPPAKQLPTCVGFCILWRVQRSLCSSHRRFHPLSGLATILRLSPAVLSVSLAGAPLPACTGCVVLQLPATNSDALL
Ga0006864_102276Ga0006864_1022761F096460RMKNTVTRVLVLLAVLVAFGASNLSAAVTPCPASSTLDVLISSFNTLANACSSQDKIFWGFTYTPGPNASAATAVQASLIFQQLAGVDIHGWNFGSNWSQAGVGGALANFTLSFQIEVCPSGDPCAGAVIPGTIINLADAVYAPSSVFTPGPETVTWSNGATVTLTNGSPGPLPPGGNIGLGAGTLGPITVTDNFSGMGDITQTTDRFYETVPPTTPEPATLGLLLSGLGL
Ga0006864_102554Ga0006864_1025541F037359MGSVDEETIKASLARINAGLQSVGSPNVFEQYQHGVYLNQPFGRSEHAHQVAYALGEGQGYARVEQDKGPDQNDQFWVRLLKPNEITDDMLPIATGVMDQMRRLEHDVHQKPEPAEPRSEDIPTPTPTGEVVSTASLKVVELREKSAQLPGYAYAGGQQLNTIFEVGDGGGAKAVAIKGIRSQRDAMLELHSDGHVAIHVDAADALGGIRDYTRYLTTRDDRDLSQAGGPLVVEFTKEELANVASISTVDAGQFGRRTVITYNDNRSLNVMAGDVRIALKTGDDEITIPVSASGETLSTLRANHPE*
Ga0006864_102840Ga0006864_1028401F020652SK*PVDSSFSGRHARPEHGIRIRL*RKPFAPRNRFYPATDQCSGARPLFPDPVETRSSMRPFALRQRRSIFRSATATGSTLPTCIFDAIPKSPPGPFGSALPPSVRLFVAARGTIHARNPLPSPISEFLVCDQAFTPLQDLSIPRAHSAQLDSRRRSLPLRVARFSFAPRCARNNHLFTSASDHRSGPATSRQAHC
Ga0006864_102911Ga0006864_1029111F088420RKMRKNNKNKGPRRRRYDGDQGTVERSIARANRPPQLSSYSIMRKNKLRFSCSTAQASFKVTLQNILDCMLIATTATAGVQLWQAVRLRSVEAWAPSSGANTTNPAGATPNTVSVVFTGTAGGNFDTNNTIFTDTSMSVEPAHIYAPVPNYGESTMWSYAGTGSTAFTLSCPIGTVIDVVFDACNAYAGGIAAPVATTGALAGATAGNIYLRGLDGTPIAATQLPPVAPAVMVQ*
Ga0006864_103079Ga0006864_1030791F038498PGFTVRLSEPPACSAFDPRRICL*ISGPPLAVAVFQPAPGQCCNLSKLKSLRRSWKLETAFHSLATTFSHHCEVKVPDLPLRFRAENPAEPVRSRTPSLRSVFEAEPGRILRPLPVALRRSPALLRFHSISTPLEAYLQSPPDQSVRPSSSRGSLPDETLACPLLPSAISFRISPRITALDALYSARLIVP
Ga0006864_103570Ga0006864_1035701F026497RKETIWTVVLCGLAGFALAAPAAAKDVALNGAAVDVHTAVIAVHEAHAGNPLPGLHVDAKVKGRTMDIYIAPMDFVAKYDVKVRKGEDVHIVGTEVKSGEADVVLAREITTGAIDPKTGIFHENMTIYLRNDEGPLW*
Ga0006864_103627Ga0006864_1036271F028444AVAGYRPGGVMAAAMPAARPAADNVQEHRTMNHDGERSDVVAAARGGAIIQLWQTPSRIWPAYPTVAVIRAASRLGRGRGQRRSPAMGGVTVFLDGAKVGAIAPKQIKVYQVSTGEHSLTIHFLGGLRRSRKLHVPLAEGEEKQFVCLLNGWAWPSIRPATAKDVAAMERWQSPDVDASDLAEDDSRSETTP*
Ga0006864_103682Ga0006864_1036821F003877RNFIGDEGRSFGFGDQVADPKPPRAALVKSHSGERRGNVGTMIPAGTVERGERKRTVDDVSKRD*
Ga0006864_103793Ga0006864_1037931F018180RGHGSDLLTLRLPFAHMPAVFFETSPAFWKVNEACPLSDPSRDERSFCSAFRRFSVGWFLSNPPEPSAPCWRTVATVYPLGNCDSLKRETRLSYLTRLGTASHRPLSLSSFFALTDSARTPPEELVNSASHSKPCGAV*
Ga0006864_103986Ga0006864_1039862F045277GYYPSGQVCCSSIALHFRGLRSLSGPTCDRANRVTQACRLKRIASQHDRRSGHIGDFTDHLCPCPSILRWALPCGREGLFSKRWQDRSVASDYRNPVADNPPTSNCICIIARFHCLHCTPHLAGNSPRGEGPGSLSLSGLAVPVELFLPSLRTWSSRGLPAGPGL*
Ga0006864_104293Ga0006864_1042931F102254GETRISIHRRRRSEASGQPGDSPSAEPEDAGFGATRSLIRRRHWRSVNPGQPGNLPPMPLKDASQEATRDSIAGEAGRCRIRGNPKPHRKAALEERRPGATRSFSADAAEGCEIRGDSNVHRRHGRKMQGTGRPGNSSEGVIGGAGSGATRSFTAGSAKGCEIRGNSKIHRRQGLKRQDSRRLGA*
Ga0006864_104708Ga0006864_1047082F078329MSAPNRTEQQASFKALKRFSAKQKGGKLRGHRLAVLIAEAPTGHAGGGRGWEADHL
Ga0006864_105397Ga0006864_1053971F031390MPLVSSDWAAVNGALDSSPLDEQLVGLARASEEARLQHDRQWIASLGQKWRGHHGQDLRLRWDTGKTLNDRLGPPTVRLPRGEGIMTLLVDETGLSESGLNRMRWFAFRFPTFEEFKASQLGVDSWEKVCVLLVGLSQKEKAAEAAVNGSADKSNEPGKKGIQAILRSLRAVAKA
Ga0006864_106483Ga0006864_1064831F066372STNSNGNIYGFTGTLVPSPGAHDFMQLNNDPTPSNMLRNPGILGSGAPYVYWAFYGFIGDRFGLEMGLEPGEDNLDYRKFNYRIESGYFLANTDANFWRLSAEFKAGDDMIPGVATLTASNDGVRTLVPADAVRGISQTRASGTPLSSLNMGDAWRWLFGIAGGFADRGPSSFDISISKSVETETYTDASGEKMGAVGGEMAYYYDRTWGLVLQWSTYNTWNFTDQNGVVHQIPTDPSWNITVVRRLAMNFCIYGAYGNSQTYALDQKWQDGRSWGIYLQYLW*
Ga0006864_108288Ga0006864_1082881F106054AATLNYKVNPWCTFAIEQSTYATRLKNNEHYLIAGTPSNEWQDHRTEFGPIFTF*

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