| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003900 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0047180 | Gp0106535 | Ga0063329 |
| Sample Name | Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 30 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Sao Paulo, Virginia Bioinformatics Institute |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 40851481 |
| Sequencing Scaffolds | 1 |
| Novel Protein Genes | 1 |
| Associated Families | 1 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → unclassified Halomonas → Halomonas sp. KM-1 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Compost Microbial Communities From Sao Paulo Zoo, Brazil |
| Type | Engineered |
| Taxonomy | Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sao Paulo Zoo, Brazil | |||||||
| Coordinates | Lat. (o) | -23.651072 | Long. (o) | -46.620675 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026607 | Metagenome / Metatranscriptome | 197 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0063329_1062453 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → unclassified Halomonas → Halomonas sp. KM-1 | 580 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0063329_1062453 | Ga0063329_10624531 | F026607 | MLKRFVSTTLAVAFALSASVALAGTYVTGPLPPEFGGGFIPPDPAVLKNVQKASKEGAKLAASVEKCYAKGAANFSKGKATGVDTCLNDPSKGVLPKYIAKVEKIASKAPGLPPCAGVPGSSGALIASLVQGFNSLVYCQSPSGAFVDGTATF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |