NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003887

3300003887: Freshwater pond sediment microbial communities from Middleton WI, HM 5/6 enriched by Humin under anaerobic conditions -HM Sample 3



Overview

Basic Information
IMG/M Taxon OID3300003887 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0113782 | Gp0109338 | Ga0062443
Sample NameFreshwater pond sediment microbial communities from Middleton WI, HM 5/6 enriched by Humin under anaerobic conditions -HM Sample 3
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Wisconsin, Madison
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size175020349
Sequencing Scaffolds10
Novel Protein Genes12
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales1
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter2
All Organisms → cellular organisms → Bacteria2
Not Available1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → unclassified Candidatus Competibacteraceae → Candidatus Competibacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. RBG_16_69_141

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humin And/Or Glucose Under Anaerobic Conditions
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture → Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humin And/Or Glucose Under Anaerobic Conditions

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → pond → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationMiddleton, WI
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009620Metagenome / Metatranscriptome315Y
F020864Metagenome / Metatranscriptome221Y
F045136Metagenome153Y
F066898Metagenome / Metatranscriptome126Y
F079531Metagenome115Y
F085790Metagenome / Metatranscriptome111Y
F090578Metagenome108Y
F096266Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0062443_1000335All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales850724Open in IMG/M
Ga0062443_1007219All Organisms → cellular organisms → Bacteria → Proteobacteria25268Open in IMG/M
Ga0062443_1007495All Organisms → cellular organisms → Bacteria → Proteobacteria28790Open in IMG/M
Ga0062443_1010485All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter18407Open in IMG/M
Ga0062443_1023043All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter19513Open in IMG/M
Ga0062443_1031984All Organisms → cellular organisms → Bacteria2538Open in IMG/M
Ga0062443_1035998All Organisms → cellular organisms → Bacteria17598Open in IMG/M
Ga0062443_1043107Not Available725Open in IMG/M
Ga0062443_1075623All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → unclassified Candidatus Competibacteraceae → Candidatus Competibacteraceae bacterium1571Open in IMG/M
Ga0062443_1128736All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. RBG_16_69_14594Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0062443_1000335Ga0062443_1000335285F096266MIDARVVFLLMTSLMLAILVGIGIATYRKGRKQKMEEPKYRMLDED*
Ga0062443_1007219Ga0062443_100721916F079531MIRLARIAVLACALAAAAPASAQYTFTQPGQQPQPVQQLQVWNNVARVNLGVSFYNSTYWNCFYWGWTVSCSGGAWASYIPFTVGPQVDFNLQGMNNISIGFNVMMGTVSGQLTTGQSASASATVWQPTLDYVAKFGPSTQDTVGRFRVGGGMYIGPNSTYGGAFRIGGGASFLNANRLGVGLDLVLEGGSYQGYWIGGLQLLASPEFHF*
Ga0062443_1007495Ga0062443_100749516F079531MRTWIRMAVLAVTLAFAAPAAAQYTFTQPGMQPQPVQQLQLWNNVARVNLGVSFFNSGYYNCNYWYGYYPTYTCGSGSFVSYIPFTVGPQVDFNLGGMNNISVGFNVFLGTATGTLYSGNLSQSVSKSVTIWEPTIDYVAKFGPPSQDTVGRFRVGGGMYIGPNSELGGAFRIGGGASFLNSNRLGIGLDLVLEGGGYNGYWIGGLQLVASPEFHF*
Ga0062443_1010485Ga0062443_10104851F066898MTTQTQNPTTLHFHVSKHGWKDLFVVSFLAIVLGAFVAQISSTPKHSFASPPMASAPLNATSNG*
Ga0062443_1010485Ga0062443_101048511F066898MTNQNQNPTTPHFHVSKHGWKDLFVVSFLAIVLGSFVAQISSAPKHTSASPPMASAPLNATSNG*
Ga0062443_1010485Ga0062443_10104858F066898MTTQTQKTIHFNVSKSTGWKDAFVVTCLAIVLGAFVAQISSTPDHSRTAQPMASVSATAAVNG*
Ga0062443_1023043Ga0062443_10230432F090578MDRCRGASPVLIANAMWDTNPWAPWGLIHVVRDGVATVTETGLWFLLQRHPDAVEADGKGYWLYLDQPYRAERAGDRAFFKLMPAPSRRRGG*
Ga0062443_1031984Ga0062443_10319842F009620VVMALEAWDKFATPGEKFDETEAPSEALDRREMIVLMGESHSGQKQKFLPIICSGNGKFFGFGESEAPTMDXXXXXXXXXXXXXAQLLPTKVPDAAMRDLALTMLKVKGVGSATPGAIPRLHRNRR*
Ga0062443_1035998Ga0062443_103599812F079531MRHTIRAAVLSSMLAVTMPAAAQYTFTQPGQQPQPVQQLELWNNVARVNLGVSFFNSGYYNCNYWGGYYPTYTCGSGSFVSYIPFTVGPQVDFNLAGMNNISVGFNVFLGTATGTLYSGNLSQSVSKSVTIWEPTIDYVAKFGPPSQDTVGRFRVGGGMYIGPNSELGGAFRIGGGASFLNSHRLGIGLDVVLEGGGYNGYWIGGLQLVASPEFHF*
Ga0062443_1043107Ga0062443_10431072F020864MAYKSGADGVTKSGKTKGKNLGDSGPSVGTQKGGKGSKGVTTDAMKSVGRNLARVKNQG*
Ga0062443_1075623Ga0062443_10756233F085790PCVNPCSPNLSLKSDPACIAFRSLSAFSYLGSARHLGAGVAA*
Ga0062443_1128736Ga0062443_11287362F045136RKDAVYRMRVARKTLAAIKRVAAANGEDASEWGRAIIETELRRDLAAIQLRDQLRAAKPGSLTEDEALDLVNEAKRATRAR*
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