NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003844

3300003844: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor_6/25/2014_ DNA



Overview

Basic Information
IMG/M Taxon OID3300003844 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0055735 | Gp0103144 | Ga0056914
Sample NameWastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor_6/25/2014_ DNA
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size371042174
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum1
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
TypeEngineered
TaxonomyEngineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMadison, Wisconsin, USA
CoordinatesLat. (o)43.076217Long. (o)-89.411742Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014467Metagenome / Metatranscriptome263Y
F016391Metagenome / Metatranscriptome247Y
F026170Metagenome199Y
F034766Metagenome / Metatranscriptome174Y
F058255Metagenome135Y
F061953Metagenome / Metatranscriptome131Y
F069722Metagenome / Metatranscriptome123Y
F084316Metagenome / Metatranscriptome112Y
F088924Metagenome109Y
F104545Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0056914_10000918All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria22746Open in IMG/M
Ga0056914_10006663All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum5523Open in IMG/M
Ga0056914_10024895All Organisms → cellular organisms → Bacteria1893Open in IMG/M
Ga0056914_10035735All Organisms → cellular organisms → Bacteria1440Open in IMG/M
Ga0056914_10035988All Organisms → cellular organisms → Bacteria1434Open in IMG/M
Ga0056914_10036324All Organisms → cellular organisms → Bacteria1425Open in IMG/M
Ga0056914_10056377All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1031Open in IMG/M
Ga0056914_10089281All Organisms → cellular organisms → Bacteria742Open in IMG/M
Ga0056914_10104083All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium666Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0056914_10000918Ga0056914_100009183F084316VGKFEVGDRVIVNEGDFKGDRGTITDKDLIGDEIKVALEEDGREIDTHEAHVSLLERED*
Ga0056914_10006055Ga0056914_100060552F088924MTCDDRPIVKQIGFACLASSALLSVFSRTTDKSVCVTLSAFLCFLCGFTQAAEPLKLLFAGSSSMYWNDLPREVAKIVDGKIAGHIGEQVIPEAVGRSGSDIRVYLEPGFNRYEYGVKPGQSFLDKIATEKPDIVPMMVVCRFIMGDDAPKNGNPDHATSITRYCEAIRAAGGEPMFYEMGWGKTEREAEGRQRILELAKKNQITLFAPCSTAWARVYAEKPDLALQHPKDNAHPGDAGHFLNLACFYAALTRESPVGKLPRTFHVWPHGKYDAYEAKLATFQPDAYQAAMAKWMRKHMAMNQTGTLDEETATYLETVAWETWNDVSKRLQVR*
Ga0056914_10006663Ga0056914_100066634F016391MSDSYLRYTDLATAIQLARANGMTTAQIIRALTGSMTHADALKLARMAAPLLDISVQMFMQLRKNEA*
Ga0056914_10024895Ga0056914_100248954F069722MRVRLTAELDPKAKRERPALKMCAAHEKALGHGSGAALQEG*
Ga0056914_10035735Ga0056914_100357351F026170MPGMARERTEGEQKAVETILRALAHNLQRLQEEAEMQALRGEVDPGVQKGLAMALRETNNMLPRRKRVK*
Ga0056914_10035988Ga0056914_100359882F034766MPDAPRKYLMITPDQVRSARRFWPQVSDKTWCLVFRRGEEPMVLNKAPHRGVGFVTVEVPTPEQTKEGMYYRRDMDVLILVAGETDLVRV*
Ga0056914_10036324Ga0056914_100363242F014467MRKTTGTVIVAVAALALGSSALATMEIQKEYKAKDPKASCASCHVDKMPKKEKHEMNDFGKKVLEAKGKDGKIDWAKVPAAK*
Ga0056914_10056377Ga0056914_100563772F104545MTAKDIRVGKDQPIRTGTAQHARQRIVGQQAGIDCDAATRAVRVPMGSGQPDDVEPVDTILRPVGRRKTFRDVLASIGRVRQRLEMARVPKPYQHAVIKVAVQKSDR*
Ga0056914_10089281Ga0056914_100892812F061953KMPGTCDSCGESAAELLSVGTVVDYAFRPEYRFCRSCYDRYGGRHDDLHQKAVAEQQLPPLISRPDSLEDVPE*
Ga0056914_10104083Ga0056914_101040831F058255FSDPPLTREELRSDQKSLQALYDALAEGYRLPPARVELSSRRATGGVIQYGPPHVIRVSAHMSAADRRQTLLHETAHAICHDRWGVDEGHSSRFWEIARELGVTRKSAPETDRLATIRARNARYTYRCLGCAEEWTRRSPFGRARLCASCEGKGRPSRLILVRRPKRAARLKR*
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