| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003822 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110170 | Gp0088274 | Ga0007812 |
| Sample Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Jun07 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 2142869 |
| Sequencing Scaffolds | 11 |
| Novel Protein Genes | 11 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomicrobium → Methylomicrobium album | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014608 | Metagenome / Metatranscriptome | 261 | N |
| F020530 | Metagenome / Metatranscriptome | 223 | N |
| F032933 | Metagenome / Metatranscriptome | 178 | N |
| F039455 | Metagenome | 163 | Y |
| F043698 | Metagenome / Metatranscriptome | 156 | Y |
| F047673 | Metagenome / Metatranscriptome | 149 | Y |
| F069657 | Metagenome / Metatranscriptome | 123 | N |
| F079596 | Metagenome / Metatranscriptome | 115 | N |
| F089763 | Metagenome | 108 | Y |
| F104360 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0007812_10028 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1874 | Open in IMG/M |
| Ga0007812_10048 | Not Available | 1473 | Open in IMG/M |
| Ga0007812_10086 | Not Available | 1157 | Open in IMG/M |
| Ga0007812_10133 | Not Available | 950 | Open in IMG/M |
| Ga0007812_10261 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomicrobium → Methylomicrobium album | 748 | Open in IMG/M |
| Ga0007812_10307 | Not Available | 702 | Open in IMG/M |
| Ga0007812_10362 | Not Available | 654 | Open in IMG/M |
| Ga0007812_10398 | Not Available | 634 | Open in IMG/M |
| Ga0007812_10658 | Not Available | 516 | Open in IMG/M |
| Ga0007812_10668 | Not Available | 512 | Open in IMG/M |
| Ga0007812_10688 | Not Available | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0007812_10028 | Ga0007812_100283 | F039455 | IYQGGFEDITGALQLAKSMGLDVTAAQVVGDSSVIVSQVYGENYSPKIICDSFQKDLWRLSGKLELWPKQPPLIFDRRDKKRELKLIKDIPKNKPWIVVSTGGFSSPFQYKKLLDLLIRHELSDFHVIDLAKIKAERFYDILGIMDHLNTYAMILTDSAPLHLSYATNNPVHALVTDTPTMWHGSAWRPSYASYTRYKNFPRDVIRILDLIKNPPEPPRHPDIVHVYQRTPWATGEEKRRNAVAKNTWDKIGWVDCGLDDNCFVRHAGNVIPDEEKNIPMIKDMIRMACIGRKEDDVIVLTNSDTCVASDFVKRLEGILPLYAYRYDFNYLESPISDDQIATGKKYAGCDLFAFRVSWWRKYHTQFPDMVLGRHSWDRIMRELIKSTGGRELDQVIYHERHPSGWENPQNLHRDPSNLRNCKLAREWLQERKMPLLEIEGLNYEGKFKKPTFKKV* |
| Ga0007812_10048 | Ga0007812_100481 | F014608 | VPDPAPTLLDSNFVEPPNLQLLFRPSGKYAASTHFIHIRVPFNFSQLLATPDNXFFQYHNYIELWPEPFRTQVEEIAEISRSCIADKLNDFIDILDALPQNEVITRDKRFLDLIALGMSTAALTLSTFNSAKISKLETQIASSNKRIDHLVDITSLHEKHFKAVDQKLDDVADKVALMLKVNKVHFAKMTDFMEQKFGTAVAISERLIHTAYNNKLSPGALHHEALLEIVKYVNEXAANSELMSXIHQPSDLFLVETSYVYKPDXKIFVLVMHVPLVAPQNLMQLYE |
| Ga0007812_10086 | Ga0007812_100862 | F032933 | MSSGSTVPDPDPELINAQNFDFAKPKLFFKNIGKYAATSTYIHVRIPFNFTTVFNTKQAIAGVYDQLLAQHDEPFKSITKSVTDVSLSIIEGSLEEFRDIIKALPQKTEISTPGRPKRFIAIGISIAAMAMSTFNTVRITQLNEEISTLKEKTDLILDVAHLHEKHLHHIEEKLEQTNKLLADLLEANVWFTSKVTDAIEKKFESVIWHHENVVKSAQHHRLAPGALPHDVLDGIIEHVTAVAKKKNLVPFVTFASDLFQIEVSHL |
| Ga0007812_10133 | Ga0007812_101331 | F069657 | MSDSSTPQGRKKRRPRVPPPPTYIEGWGEGQTYGPPWRNPFPGGWGYPWWRFERPFDRPYELVSPEWSSRPTPTYRKPSNLFWEPQGGQSFCSTSGAGSTISSSSGQVGLPRKKIRIEEVIDSDPQPESVSSNQASQPNQIGKPCATGVGSTQVRRDESFAKLSRKAQLYETAKDRFQRCLIHHNQHFHKSLS |
| Ga0007812_10261 | Ga0007812_102611 | F020530 | GLSTARKNVTMVNCLFLAAFVLQMQHSGAETKQPILIDTEFTQPDKLQLRFRPLGKYAATTFTSHIRVPFSYSGLMNLESKMTQRLDQFITDIDRYKFTSTDADRRTIQSTFDIYKQNTKEIFNLFNDLLASLPHVHARQRRQWDVASFVAATSALSLATYNTVQISKLETAIEVQQAKTDLLTDISKLHEQHLHQLQGQMSDIGQEIQVVKLFAGWQIRIDRIVAQISSDDAKLRAVIATFERIIVTA |
| Ga0007812_10307 | Ga0007812_103071 | F032933 | STYIHVRIPFNFTTVFNTKQAIAGVYDQLLAQHDEPFKSITKSVTDVSLSIIEGSLEEFRDIIKALPQKTEISTPGRPKRFIAIGISIAAMAMSTFNTVRITQLNEEISTLKEKTDLILDVAHLHEKHLHHIEEKLEQTNKLLADLLEANLLEANVWFTSKVTDAIEKKFESVIWHHENVVKSAQHHRLAPGALPHDVLDGIIEHVTAVAKKKNLVPFVTFASDLFQIEVSHL |
| Ga0007812_10362 | Ga0007812_103622 | F079596 | MNSVAALLIFLLFRFPSPTSTHHIVFEEIGEMAGALSYIHAVIPVNISGLDRAANTFRSQVDHLRRNYNLAQTEIDKTMRDTPDSPHQQSLVQNIKYQRKIQEEILQTSEAEADNLLALLDNLKGTLPRVNEAPTLAMSDPHNFRIKRFIGGLLRGIF |
| Ga0007812_10398 | Ga0007812_103981 | F043698 | NMANLKPLPPKITDAFANKTARVVDAHDKPRILDLDVVDPNNGNLDTVDPNTLQVRRTFKDATQAHAAYRRLKQQNVERNRKNQLIQKKLNLEPPYSNKKLESMGQNWRSNRPTGFLSTMVSRIQPPFKEVIETAATLTFAEYPIESLDAENKTKVFREEITKAIRGWKGFDDLVAQIVHENVTFGYCGLCWDDLRDWKPEFLRQDYTFFS |
| Ga0007812_10658 | Ga0007812_106581 | F104360 | TAATIAMDAETHPSNLPPTYVSSCVNRSFRQGINSTRPPFTDLQINLAYGYDSSYLTLFQTGNFQGAYPYKAVSPGAVDGIVCSVAGQIFFIAIVNNICTLYPLIGGNDPTLMHTWFVQAENWVYIQNGYQDPIAWSGNVSGSPTNLQAQGDGLLSIKLTWTNNAEGASFN |
| Ga0007812_10668 | Ga0007812_106681 | F047673 | MFVSQIYDEAAEILATTDQKKVFRKLTQAVQTLMESGHYFHTNQEVDVCTGWDGQTITLPRGIEVPLGVNVDGSPTYFRGRLFQYHVNKGGMYNPVDWAWDDRGFVATIMDIRQPSQLVAISEHSVDAGKQIRVVGTDSNNRELRTQFPDGT |
| Ga0007812_10688 | Ga0007812_106881 | F089763 | IAMQVVKDCLEYGVHPRDFGLDISGDGGKMLRAIIIEWGRYHPESMFITPISSMGMPTDRKISNLDKRTAKEAYDRRVTESWFQVHTAMSTQSLVGIDVERHTALVSELCSRLYFHKGRKVAVEKKLDMKQRIKKSPDLADSLTYAVEMLRRAGLEFTFEDQSAESL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |