NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003807

3300003807: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jun07



Overview

Basic Information
IMG/M Taxon OID3300003807 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110170 | Gp0088276 | Ga0007814
Sample NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jun07
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size11574864
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1
Not Available13
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000784Metagenome / Metatranscriptome891Y
F002908Metagenome / Metatranscriptome521Y
F006061Metagenome / Metatranscriptome382N
F008860Metagenome326N
F012015Metagenome / Metatranscriptome284Y
F013390Metagenome / Metatranscriptome271N
F020530Metagenome / Metatranscriptome223N
F033004Metagenome / Metatranscriptome178N
F035305Metagenome172N
F043898Metagenome / Metatranscriptome155N
F049449Metagenome146Y
F061530Metagenome131N
F069657Metagenome / Metatranscriptome123N
F083745Metagenome / Metatranscriptome112N
F091219Metagenome / Metatranscriptome107N
F100438Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0007814_100034All Organisms → cellular organisms → Bacteria8455Open in IMG/M
Ga0007814_100294All Organisms → cellular organisms → Eukaryota → Opisthokonta3725Open in IMG/M
Ga0007814_101118Not Available1489Open in IMG/M
Ga0007814_101408All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1217Open in IMG/M
Ga0007814_101792Not Available987Open in IMG/M
Ga0007814_101890Not Available949Open in IMG/M
Ga0007814_101962Not Available918Open in IMG/M
Ga0007814_102619Not Available736Open in IMG/M
Ga0007814_102629Not Available733Open in IMG/M
Ga0007814_102722Not Available715Open in IMG/M
Ga0007814_102841Not Available698Open in IMG/M
Ga0007814_102893Not Available688Open in IMG/M
Ga0007814_103389Not Available618Open in IMG/M
Ga0007814_103961Not Available560Open in IMG/M
Ga0007814_104191All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae542Open in IMG/M
Ga0007814_104435Not Available523Open in IMG/M
Ga0007814_104520Not Available517Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0007814_100034Ga0007814_1000343F008860MPVVKQPVPGDIVFAHSNGIVGRAIRFAERLRWRKGSHWNHACIVSRVDNKGVAYVIQADIRGVNEALLGSVGEYTLLEPPCDRAKVLEFTNKQVGSKYGLLSIVSIMIDILTPEWFPAIRRDDTWICSAVTAEALRYAGWLQPWGDIYTVTPSQLWAALEPANI*
Ga0007814_100294Ga0007814_1002941F069657MSDSSTPQGRKKRRPRVPPPPTYIEGWGEGQTYGPPWRNPFPGGWGYPWWRFERPFDRPYELVSPEWSSRPTPTYRKPSNLFWEPQGGQSFCSTSGAGSTISSSSGQVGLPRKKIRIEEVIDSDPQPESVSSNQASQPNQIGKPCATGVGSTQVRRDESFAKLSRKAQLYETAKDRF
Ga0007814_101118Ga0007814_1011183F033004MXNQQVIVPPANNDGNDGNDGVPIHHAQAVQGADGGINLKVEQTKLPEFWGQREKDSITANAFIQRVDNMMAANNWSDHIAFRNFALVLRGSADVWIKSQETLEDITGDRRAWTIVRPLFKAEFAIESDDKRILDGLAHLAMKQNENVRDYFGRLNITNTIIMEAYDSYTVLPVEPVLTGNVQNDTAAMRAHVRARDINLAKFFLLNHFRAGLPTELRRVLNLQNEDELRLNAAVKLATIEARSREEAKCTNKVYATDTVE
Ga0007814_101408Ga0007814_1014081F035305MNHLAIWEIAPTKSDIDALAQNVANELNDGTIKPEDVAVKVAVVEAFAKQLRAKSEEYIIDFLDKCPKGKYDHLGANLTLKDSQTYDYAAYSERWAELQDQIDLLKAEQKEIEEKGKKFERGAIPLKSYKQSYTITLNK*
Ga0007814_101792Ga0007814_1017921F091219MAKCVFMQDMLKSRCKFVTLLGKYAQQKQVGWEVIFSELGFAGSGARKPRRELEGSALDFFCSLF*
Ga0007814_101890Ga0007814_1018901F049449MANLKPLPPKITDAFANKTARVVDAHDKPRILDLDVVDPNNGNLDTVDPNTLQVRRTFKDATQAHAAYRRLKQQNVERNRKNQLIQKKLNLEPPYSNKKLESMGQNWRSNRPTGFLSTMVSRIQPPFKEVIETAATLTFAEYPIESLDAENKTKVFREEITKAIRGWKGFDDLVAQIVHENVTFGYCGLCWDDLRDWKPEFLRQDYTFFSIETPQVTDQTPIWARKRRYQIAELLPVLENPPLSAAAGWHINNLVESINNAIPAGRTLD
Ga0007814_101962Ga0007814_1019621F006061QDRCKFSIGGAQEKIFRLDSNTYVVYSLGKINTNHVCPKAKSISAIQISSGQTVRVNPSCYVRTMDHIITADDSEELEIHSKWLDWTWTLGQLFQQPENDKVTKAIDRLRERIAGRFDADILINELETMTKEAKEEPLTHWIFTTPGAMLGGAVLSLLLLFCCWRACRSSGNNQYPVPSAPPAPTVIVNRTVEPTRRHDPFH*
Ga0007814_102619Ga0007814_1026191F061530MDYNGICLDLPKDTTYGLSFGENVPQFIRELTAYRLTRGEFGRRERVKNGIKLEHTDLKNPAQHMVNCFQLIYGNDVLLQSQGIANNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQSKYGKDAAIGNLVEYRRMIVFE
Ga0007814_102629Ga0007814_1026291F013390KTDIFIKNRKCTHTVQLADESSENVLGIDFLQKFRLRVDPRTEEFTFQAAPSRALFATKNFTIPPFATILAQARTFQDINPELHYIADIGAPKQPLISGLSTLVSFDQRKQCTMPIQNCAPHEITVSTGDILGILSTEKEDPIPFDDNSLATICEQIHQRLPKIKKRAWTRKEIEERCHLGAPEPYRSQYIDILVKHQAAISLDKYDLGLAKNFTHRIHLKDDQPIFRKQFNLPEAHTQFIEQS
Ga0007814_102722Ga0007814_1027221F033004HHAQAVQGADGGISLKVEQTKLPEFWGQKEKDSITANAFIQRVDNMMAANNWSDHVTFRNFALVLRGSADIWLKSQEILEDITGDRRLWTIVRPLFKAEFAIESDDKRILDGLAHLAMKPSENVRDYFGRLSIVNQIIMEAYDSYTVLPDEPVLTGNVQNDTVSMRAHVRASNLNLAKFFLLNHFRAGLPTELRRVLNLQNEDELKLNAAVKLATIEARSREESKCQTKIYATEVSEN
Ga0007814_102841Ga0007814_1028411F020530PILIDTAFTQPQKLQLRFRPLGRYAASTFTSHIRIPFNYSSLMHLPSKMDQRLDKFLQDLDIYHFNMADSTLXTIHSTFHVYRQNTREIFKLFEDLLASLPHVHVRQRRQWDVASFVAATAALSLATYNTVQISKLETAIEAQEAKTDLLTDISKLHEAHLHQLQGQMDGIGNEIQVVKLFQEWEVRIERIIAQISSDDAKLRAVIATFERIIITAFNKKLAPGALSVDVLN
Ga0007814_102893Ga0007814_1028931F083745VTVVETGKLRLVQIIQFIARHLSPQHWTLAYSNIDNLIIALRRGASLDEAVLATAAAPADVESYLAEKPLYMVHHPDGGGQSQPGMAKLEWLCNIPNWQFITMMTQHYALVTDHEEKNVHKSSGWSSLTNRQAFDTAHRIMFGKAPVVIPQVRRVHKLATMATAPMNIVVQPKNVXV*
Ga0007814_103389Ga0007814_1033891F002908MANNDDIQVDLNQDQDGQVVQNVPAGAQTTLAFRVDQSKIPEFWGQKSKDTVTAIVFIRKIEDLARTNHWTDTATYANVANGLKGFAREWLFATADMLDWTDAQLTWTNLKPRFQKQFATQTDDKQIIEGLSNLAMGPTETTGELLARITNLMVIIKESYAAYNNKAPEPPTDAQGLGHVGLLENTA
Ga0007814_103961Ga0007814_1039611F000784PSKLQLLFRPSGKYAASTHYIHVRVPFNFSRLTLMPSIIFDRYHRYIEVWPEPSRTQVEEVAELSRSVLQDKYNDFKNQLDALPQYEVVTRDKRFLDLVSLGMSTAALTLATFNTVKISHLETQIANNNKRLDHLVDITALHEQHFKAVDQKVDDMADLLIKILRYNKVKFAKLTDLMEQKFGTAV
Ga0007814_104191Ga0007814_1041911F100438LIHKDLEDRNLLLARLTLKLEKIMNEKKSKRRIQIRDLQKQEIEEKQERRLLIRLHIFYRILLINL*
Ga0007814_104435Ga0007814_1044351F012015LNVNKLKLFLQEHQSEQEQTFLDYNFNDAESDKPLTRARAKLINYKNAAQLALLMLKEEGGSSEIETIDSLCSEPCPSCDTENDYFKLNPPKRNCTQKCHNCEEYKKLFLKLKECEEQCYQLKQQINFARQHRLHQINQIKSVDTKLKTGIAESLREPLMKIAQHLLISDKNT
Ga0007814_104520Ga0007814_1045201F043898NLVFHTHFSNERLHTHRVMVTAPAVLAAAASAPSTVPRYFQSQVEMTGKKRMHPENVAAIKNRFLELFIFRRPPQDERDLELCDCFNRKHFIVGTFERALALLEKHQPSDFHGPALYAYVISALGKNAPLVEQVTSGDQEHYMRIHRLAAKYNV*
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