Sample 3300003788

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003788

3300003788: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_2/2/2009_ DNA

Overview

Basic Information
IMG/M Taxon OID	3300003788 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0055735 \| Gp0103136 \| Ga0056906
Sample Name	Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_2/2/2009_ DNA
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	162602251
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
Type	Engineered
Taxonomy	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.076217	Long. (^o)	-89.411742	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003605	Metagenome / Metatranscriptome	477	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0056906_1000309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	40707	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0056906_1000309	Ga0056906_100030936	F003605	MAIGDKASAAGYDLVPDSGENGRVRWGAREINRTRDYLADIWELIPKTKRAYQEAGGISYGTDDPSGGSDGDIYLKIL*

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