NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300003766

3300003766: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus triangulatus BAHAMAS.2



Overview

Basic Information
IMG/M Taxon OID3300003766 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095504 | Gp0096009 | Ga0049104
Sample NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus triangulatus BAHAMAS.2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size20770946
Sequencing Scaffolds4
Novel Protein Genes9
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Gutless Worms Symbiont Microbial Communities From Various Locations
TypeHost-Associated
TaxonomyHost-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000014Metagenome6831Y
F000084Metagenome2468Y
F009879Metagenome311Y
F011565Metagenome289Y
F034465Metagenome174Y
F098664Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0049104_102028Not Available1155Open in IMG/M
Ga0049104_102116Not Available1081Open in IMG/M
Ga0049104_102412Not Available897Open in IMG/M
Ga0049104_103266Not Available633Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0049104_101555Ga0049104_1015552F034465MICDPHIGTTHRGHLLVFITVQNLVGIDVVALIICMFFDFATLA*
Ga0049104_101631Ga0049104_1016311F009879MFVIVGTMTDAHSLRSHVGMGSESDCLLGHSKRILRISDSETGMKEEKSAGVLGGECESGDVVEGLLARERRSLDILSVKKEAKESASEVPGVVDGRGEEDFR*
Ga0049104_102028Ga0049104_1020283F011565PLNITVLGLASSITTNIYDMSTPPPYAKDLGNLLYHSAVVGGLSVGYSMVGKRLLKMKPADLGRLDIEDSAKLVGTVALALWTQDMLVKQGIIPANIIKST*
Ga0049104_102055Ga0049104_1020553F009879VSERLTMFVIIGTMTDAHSLRSHVGMGSESDCLLGHSKRILRISDSETGVKEEKLGGVLGGECKSGDEVEGLLARESRSLDILSAKKEAKESASEVPGVVDGKGDEDFR*
Ga0049104_102056Ga0049104_1020561F009879SERLTILVIVGRSTGEHSLRRQVGMGSESDCLLGQSERIFRISDSEVGVKVEKSGGVSAGEGKSGDDVVGLLTRRRRSLDILSVKKEANQSASEALGVEDGKVDEDFRCRSLLTVCHRRLGFPEDEETRLL*
Ga0049104_102116Ga0049104_1021162F000014AFSALTLLVGRQEGHPARKNLSDEVLAWLSVWSEVQMTCIWSS*
Ga0049104_102273Ga0049104_1022731F000084VLEDSVYCFCTKFGQLILRKIIKIVATRCQILRLKCTKIDFGWGSAPDPAGGAYSAPPDPLAAFKGAYF*
Ga0049104_102412Ga0049104_1024122F098664MQTERRVAANPQTKPTDLGWESAENWLLPSADTITIDYYYSARKLILILPSREG*
Ga0049104_103266Ga0049104_1032661F011565MSTPPPYAKDLGNLLYHSAVVGGLSVGYSMVGKRLLKMKPADLGRLDIEDSAKLVGTVALALWTQDMLVKQGIIPANIIKST*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.