NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003765

3300003765: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/13/2013_ DNA



Overview

Basic Information
IMG/M Taxon OID3300003765 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0055735 | Gp0103141 | Ga0056911
Sample NameWastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/13/2013_ DNA
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size118237500
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
TypeEngineered
TaxonomyEngineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMadison, Wisconsin, USA
CoordinatesLat. (o)43.076217Long. (o)-89.411742Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007648Metagenome347Y
F100264Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0056911_1001915All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi5062Open in IMG/M
Ga0056911_1002914All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium3153Open in IMG/M
Ga0056911_1005137All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium1944Open in IMG/M
Ga0056911_1007080All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium1567Open in IMG/M
Ga0056911_1007259All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium1544Open in IMG/M
Ga0056911_1008904All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium1359Open in IMG/M
Ga0056911_1013369All Organisms → cellular organisms → Bacteria1062Open in IMG/M
Ga0056911_1039277All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium564Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0056911_1001915Ga0056911_10019156F007648MTIQHTPEQEIWVMTTEGANITGYNSRYLQQLAKKNAQLPDNERFIKVRMRSNRHELWLPDLLHYIDEIGYGPHQNKK*
Ga0056911_1002914Ga0056911_10029145F007648MAIQITPEQEIWVTTTEGRELTGYNRQYVEKLANKNWRLPEDERLIKLRKRSGRFELWLPDLLRYIDEVGYGPHQDKA*
Ga0056911_1005137Ga0056911_10051372F007648MTPEGAELTGYSREYLERLAYKNLRLPDDERLIKTRKRVGRYEMWLPDLLRYIDEIGYGPHQNKK*
Ga0056911_1007080Ga0056911_10070803F007648MAVEITPEQEIWVTTREGAAATGYNSQYLEKLANKNSRLPEAERLIKIRKRSGLFYELWLPDLLRYIDEIGYGPHQK*
Ga0056911_1007259Ga0056911_10072593F007648MAREITPDQEIWVMTKEAAEITGYNHEYMEILGKKNFRLPENERLIKIRKRSGRFYELWLPDLLRYIDEIGYGPHKNK*
Ga0056911_1008904Ga0056911_10089042F007648MAKAITPEQEIWVMTTEGAELTGYNRYYLEKLSKKLSQLPEDQRVIKWRKRLGRHELWLPDLLRYMDESGYGPHAKK*
Ga0056911_1013369Ga0056911_10133692F100264MSHGKTATGNNMLLSLASTLVVGYLTTRFRFFRFMWRFMPLLVVVSAWFMNRQAETVSEQESDERVKEPAA*
Ga0056911_1039277Ga0056911_10392771F007648MAREFTPDQEIWVMTAEAAQITGYNRQYIEKLSKKNWLLPEDERLFKLRRRSGHYYEIWLPDLLRYIDETGYGPHKNK*
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