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Sample 3300003750
3300003750: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_6/14/2005_ DNA
Overview
Basic Information
IMG/M Taxon OID 3300003750 Open in IMG/M GOLD Reference Gs0055735 | Gp0103133 | Ga0056903 Sample Name Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_6/14/2005_ DNA Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? Y Use Policy Open
Dataset Contents
Total Genome Size 131716788 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia 1 All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae 1 All Organisms → Viruses → Predicted Viral 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa Type Engineered Taxonomy Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Unclassified → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
Location Information
Location Madison, Wisconsin, USA Coordinates Lat. (o ) 43.076217 Long. (o ) -89.411742 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F054825 Metagenome 139 Y F091594 Metagenome / Metatranscriptome 107 Y
Sequences
Scaffold ID Protein ID Family Sequence
Ga0056903_1000011 Ga0056903_100001173 F054825 MSSQPTTRDLDLWLIDKDAEGVIKPGPGVVYDRAGIGIVFMDERGRDFTFIDVGTALEAWAGQGARLSPALARDLARALERFADYTDGHTAYVRVETADP* Ga0056903_1000298 Ga0056903_100029811 F091594 MSENGITHYCLGNGAPKCDGCKQEKNWQALNQMPGTLRKPLQAQAQRIDDTDCILSGRPWYVGA* Ga0056903_1004010 Ga0056903_10040103 F091594 MSEQAIKTFCLGNGEIGCDGCGQEKNWQTLNQMPNTLRLAMQDRAKRIDDSECIFRGRLWRT*
