Sample 3300003718

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003718

3300003718: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_RNA (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300003718 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0088396 \| Ga0008277
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_RNA (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	18639623
Sequencing Scaffolds	11
Novel Protein Genes	13
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	3
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000155	Metagenome / Metatranscriptome	1877	Y
F001099	Metagenome / Metatranscriptome	778	Y
F002698	Metagenome / Metatranscriptome	536	Y
F009292	Metagenome / Metatranscriptome	320	Y
F011850	Metagenome / Metatranscriptome	286	Y
F024200	Metagenome / Metatranscriptome	207	Y
F039672	Metagenome / Metatranscriptome	163	N
F068876	Metagenome / Metatranscriptome	124	Y
F076148	Metagenome / Metatranscriptome	118	Y
F081370	Metagenome / Metatranscriptome	114	Y
F097384	Metagenome / Metatranscriptome	104	N
F101139	Metagenome / Metatranscriptome	102	N
F104958	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0008277_101797	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	961	Open in IMG/M
Ga0008277_102283	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	749	Open in IMG/M
Ga0008277_105478	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	884	Open in IMG/M
Ga0008277_107483	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1635	Open in IMG/M
Ga0008277_110396	Not Available	673	Open in IMG/M
Ga0008277_110705	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	576	Open in IMG/M
Ga0008277_110842	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	837	Open in IMG/M
Ga0008277_111705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	794	Open in IMG/M
Ga0008277_112700	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	783	Open in IMG/M
Ga0008277_122496	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	628	Open in IMG/M
Ga0008277_125018	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	536	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008277_101797	Ga0008277_1017971	F011850	SMFKTSAVILAGLMGAEAFAPSGVAPTSSRLALRASTARKSGLVGPKMMDASSIADGVQLIAANGVANVPFVDEVTGEGLGFTSPLSHFESVIGLWVLFSLPVWSAAYKKVGGDTPDWFGVSQVTEEAPGIGAFPRYAPAYDGPSFSEGLTYVLSFLWKPPILIAWKPRADLDRAAMDPARETVVSSIYKGFGGALDKTAVYDEEDQLLILSDIETFPETELGRRREKIAEASGLYSGNPSFGKSLIEYSEETKKGKKDFGTVTISAAELAALRAEAAKKK*
Ga0008277_102283	Ga0008277_1022831	F039672	MAPDLTSKRVGQRLPECSAEVVLSTLLFEEIELLEGLQSVDSKDKSVVSSHTKTGHEVLNLDVVEDHSGDVVGVLLSHGLVGVGLNLGGDSVSVSEDGGGDLGAEGSGVVVSLLLGVGDSEREVLGDLVEVTLDGGEELSLWVLLNLSGFGSSRLVSSDVLIGNGISSDIWESSNVLNRVWVMVVSLDGS
Ga0008277_103006	Ga0008277_1030061	F000155	MKFAAIAVVATVSANTYDFMGEDELLAQLSTTLSSAQRSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0008277_105478	Ga0008277_1054781	F009292	LDQLLQLTLTSLPPRPIHSMPSDNPPMSQSMTVKAITLKVNPTYSQDVVESVTLKSFRKVVGYDTFNSILKGARDEKKDISDHYNVTLTVMVKRIPESTATHVNDAFAGGKSLKDVLDKGFPYDDGDNSIDDQTANWSKKNHKGQIQVGKLNGENVTKSALVNLIKDTDAPITQALVQLDSEKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVAL*
Ga0008277_106318	Ga0008277_1063181	F076148	KYTIALAALLGLASFQDVQAITLFNTAGQAIYMEDSESSSSSSSEAANVQLEGDDEEVDHSGEFFHAGQHEMLGGGGYDRVTPANFAADSDDIFMRSMIEQYALEQKTKEGNPSGKFWMNEATTRAAAREVLETHKGLKGAALDKYLNTYFAKAWGHFDVNRSGLVEVIKMPQFMRFLASDQYMSLQP*
Ga0008277_107483	Ga0008277_1074832	F104958	MAGFNVTALDNFNNELAGELLVKSVIAGSTTEFVTVKEGIKYKEPINLQEIDLVIQDGNTCVSTPSGSVSYTQRDITVCTRTSYDGLCLKDLDTKYIGLLGPQGSYPETYAFVEEYASQLVANFQKKNDQFIWTATTEAGDCSVGLNTLLASGSGATFVSQSAPDSSNIGNQIDEQLETLAVDVQDRDDLTTFLSVANFRKYIVWLRTQNNFFFDPSAVENRGSLLSMKHPYANLTVVGTVGLQGSNRIVTGPARQIVVGTDLISDLDNFQLWYDINGDQLKHRIVTKLGVQVAYPEFWVTNNL*
Ga0008277_110396	Ga0008277_1103961	F101139	KKLKIMLNLNNKKELILEVLNSYENLTIEQLESLINNTNLNGVSFVSVKGYSSEKSNNTEVANQVINIGASYKNMLKKDTNIYANFDLSSVDVDAFNYDTINTNGLTLNEYKKAVKDSLEIALNELSQPKKKKVSNDIYFNNALAFNTNTRKLSLLGQTINKTIEKKGTFKVVKSAPKTIAKKLIERKAKGKTQTLRRFAIDNLVGSVKVSGEVVEIG*
Ga0008277_110705	Ga0008277_1107051	F001099	AVSAVKLGDDDWFAARENGTGPLDKKYERVPPEHFAAGTDDLFMRSMIMNYALEGKDKDGAPTGVFVMNEAQTKAAAAEVLASHKGIKGGELSSYMETYFPRTWAHYDVNKTGFIGVEAVPMFMRFLASDQTLNLQ*
Ga0008277_110842	Ga0008277_1108421	F068876	NKQTEGLVAIKIFVKAGEGQARIMAIADILDVSLQNKKLTNGTELGTSYLNVEGLDPSNKALYSARYLIPFKLYGE*
Ga0008277_111705	Ga0008277_1117051	F002698	QIDRIDQHALTEFINRVKLIDSFIYMKIKEGQIQSTVYLPQRDAVKHHSIQADTIFQVSEWPDTDKEMKIAFFEGNKVIEAIKHFEHDAIKGEFEFIENDEEFVASTLRIFNDELEITLSCSEPSLGFKDLSADQRDAIFARSDSKFDFTLDTHSIGKVKNLFSLDKDETFGINSDVQGINVNGKSFNVVLTPDTSGNGNVTVYKKYLNLLDKEEQTVYVSDSKVVFESNDSHTLLTISTCQTA*
Ga0008277_112700	Ga0008277_1127001	F081370	MDNSLSVVPLLEEITSILLMAWMNLGEVDHLLVELSLLETLVYEEIILLMHGSVASLASSLENLESSSESGGVVGVPGDLGWPVRVTVMHTNGVDLLFITLDTVRGTNVVSEKPSFGFTVSGEEWVRGQGLDNRSSQSADFSLLFIER
Ga0008277_122496	Ga0008277_1224961	F024200	TIIALIGAVAASQVEYAPIADETLVQTSQEAPCVYLDETVGELEYQMEMFSRTLDPRHWTNVQNIHSALVKKGTKNLPKLQVNTWGLYDKAFSFPRIRRYNFVCENMDMLEHFQDNLNTNISNTIHMENFLRVANTVHTNLLTKYHDGEFVDPALYDPKDEENK*
Ga0008277_125018	Ga0008277_1250181	F097384	IRKHNYQTQVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGLSETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRVEQASIETYAVKSRSLPPGGKSMIDTLGATVAFVVRYDLGTVCYIGYNYNTPFHADQWTRVLHSAIDM*

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