Sample 3300003716

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003716

3300003716: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_RNA (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300003716 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0088400 \| Ga0008281
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_RNA (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	13397653
Sequencing Scaffolds	15
Novel Protein Genes	17
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → unclassified Butyrivibrio → Butyrivibrio sp. AE2015	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	2
All Organisms → Viruses → Predicted Viral	1
Not Available	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000088	Metagenome / Metatranscriptome	2436	Y
F001099	Metagenome / Metatranscriptome	778	Y
F002730	Metagenome / Metatranscriptome	534	Y
F002870	Metagenome / Metatranscriptome	524	Y
F006699	Metagenome / Metatranscriptome	366	Y
F022639	Metagenome / Metatranscriptome	213	N
F030104	Metagenome / Metatranscriptome	186	Y
F039672	Metagenome / Metatranscriptome	163	N
F048370	Metagenome / Metatranscriptome	148	Y
F049593	Metagenome / Metatranscriptome	146	N
F056191	Metagenome / Metatranscriptome	138	Y
F063741	Metagenome / Metatranscriptome	129	N
F081370	Metagenome / Metatranscriptome	114	Y
F088979	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0008281_100175	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	646	Open in IMG/M
Ga0008281_100176	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	987	Open in IMG/M
Ga0008281_102063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → unclassified Butyrivibrio → Butyrivibrio sp. AE2015	616	Open in IMG/M
Ga0008281_102322	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	707	Open in IMG/M
Ga0008281_102720	All Organisms → Viruses → Predicted Viral	1864	Open in IMG/M
Ga0008281_103268	Not Available	513	Open in IMG/M
Ga0008281_103462	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	607	Open in IMG/M
Ga0008281_103614	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1041	Open in IMG/M
Ga0008281_104628	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium	928	Open in IMG/M
Ga0008281_105379	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	568	Open in IMG/M
Ga0008281_106685	Not Available	800	Open in IMG/M
Ga0008281_106884	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	883	Open in IMG/M
Ga0008281_107862	Not Available	524	Open in IMG/M
Ga0008281_110197	Not Available	596	Open in IMG/M
Ga0008281_115362	Not Available	710	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008281_100175	Ga0008281_1001751	F002870	VEAASVESAQSLVQQALLNVEAGSAAAMHLENAMSAMTETKFTDAEILSRNSQNVNVPIDEKRALTLKVSPTYTLDSVNSVTLKSFRKIVGYDTFESIRKKTRGESKDTSDYYNVTVSMMIQRKPVEAAAAPTADPYAPNGAATLASTLDKGFPYDD*
Ga0008281_100176	Ga0008281_1001761	F002870	QALLNVEAGSAAAMHLENAMSAMSETKFTDAEILSRNSQNVNVPIDEKRALTLKVSPTYTLDSVNSVTLKSFRKIVGYDTFESIRKKTRGESKDTSDYYNVTVSMMIQRKPVEAAAAPTADPYAPNGAATLASTLDKGFPYDD*
Ga0008281_102063	Ga0008281_1020631	F088979	IMSEEFSCSMDGYVSLTNQLIELSLVGLALVKETYAAILGEKLGKSVQYAWDGLVGAGSWAGFAVAALYYFGLDYGYADYMCEYSSYGYMAIDWLSFLIDFSGGEEAEE*
Ga0008281_102182	Ga0008281_1021821	F000055	KYSAIVLLVAAASAMTVSQDSTKPPPPTAADTPSSGYYGADEDDVMNNIFNHYAVPITNAAGQATGAKVLYKDGCQKAAAEILLVSKQVSEAKMESYMAEFFPRTWAKFDINNAGEIDITESHTFMRSLLGRLNQFVLAPGSLTDLKV*
Ga0008281_102322	Ga0008281_1023221	F039672	MAPDLTSKRVGQRLPECSAEVVLSTLLFEEIELLEGLQSVDSKDKSVVSSHTKTGHEVLNLDVVEDHSGDVVGVLLSHGLVGVGLNLGGDSVSVSEDGGGDLGAEGSGVVVSLLLGVGDSEREVLGDLVEIALDGGEELSLWVLLNLSGFGSSRLVSSDVLIGNGVSSHIWESSNV
Ga0008281_102720	Ga0008281_1027201	F049593	KDKEMDKELQDYYETLLDLFASKGWKQYIEDISDNMDILQDITTIPDEKQFWFRRGQIEAVQRVLSYESAIKNSYEDFEREVNA*
Ga0008281_102720	Ga0008281_1027202	F022639	MPKRIYEFICGDDHLTEAYIDSELRTTNCKVCGQPAIRIVSKPMVKLEGVTGDFPGAAMQWERKRNEKMAQERKSAAEN*
Ga0008281_103268	Ga0008281_1032681	F056191	LYLGIVRGVFARIGRALTAEMYETFPSGGSMHASVKLEGIDGRAPQERVEHV
Ga0008281_103462	Ga0008281_1034621	F001099	TAIFAIAAVSAVKLGDDDWFAARENGTGPLDKKYERVPPEHFAAGTDDLFMRSMIMNYALEGKDKDGAPTGVFVMNEAQTKAAAAEVLASHKGIKGGELSSYMETYFPRTWAHYDVNKTGFIGVEAVPMFMRFLASDQTLNLQ*
Ga0008281_103614	Ga0008281_1036141	F081370	MDNSLSVVPLLEEITSILLMAWMNLGEVDHLLVELSLLETLVYEEIILLMHGSVASLASSLENLESSSESGGVVGVPGDLGWPVRVTVMHTNGVDLLFITLDTVRGTNVVSEKPSFGFTVSGEEWVRGQGLDNRSSQSADFSLLFI
Ga0008281_104628	Ga0008281_1046281	F063741	DYQILAAPVNDCGSGDWSYYTVSVNEPQKAPLRMGSVRGPSEVCEGQEYTYTTSEGMDVYVWYVPTDVEILKKDDQVLKVKWGSTSGEVTVMGELDGTRYSNSSLYVVATGAPGVTINDEGKTNEEAAEAKTITLDYYPVTLEEANVAVDAANASVAAAHENKETYLLQANNELVLLEAALQNGIEEVSGNTTNWLLNLLGKALFLFVMSLLLGIALNFMVVWTSKYFGGLYDMDQDGTTYFKDTLTEYEGKYDGFPYVGLFTLVALIAVGSYFGYELASEYEKYLENDSWPTLMEYIGDKLP*
Ga0008281_105379	Ga0008281_1053791	F000088	HLSNECYGADEDDIMYDVFERYRVEEKNPLGAGTGVWKLPKGSGPQWAADIVRRFHVMDDDKVNDYVAANFDNFWKKYDNNGTGEIYESEGETFMRALLGPNNRFRLAPGALSDLDSTAQIHQNQFSKTPDIKTFTVSPTAYGVAAAPAAAATTE*
Ga0008281_106685	Ga0008281_1066851	F006699	VTMLRRYDYKCTVCFRTEEHWADSSDYEFSTCDDCGETSVRIISPVRTRFVGHGWPDKDDRWAKDHERAARK*
Ga0008281_106884	Ga0008281_1068842	F030104	MSREVRIQFEAMLQTVLFVLLYWTMAIMAFDDDQEEVIEFMDTSFFNFFSLIIFYLCLKHSVHYFAFLEASVVEGRTAGFIAKQFLRDFINTFSLMLRFYTLLFRMNVYDNLDDFFDSYYIFVGDFDDDEYLNELFLSIHGTILFTLDNNDDRSFLLEDENDFSNDLFYTYFVLWGKLYL
Ga0008281_107862	Ga0008281_1078621	F002730	LEGLDGVLEDWLDGLHDTESSLHIVDLWLHALDGLHLSGDLDEWLSIIKSLEDSSGKGLLDVL
Ga0008281_110197	Ga0008281_1101971	F006699	LRRYDYKCTTCKHIEEQWADSKDNQFSTCFECGETSERIISPVRTHFVGHGWPDKDDRWAKDHERAARK*
Ga0008281_115362	Ga0008281_1153621	F048370	MWDMNNRTTEEQARINCDRSNGKNTGVEDTATFDDDYDVAIRLAGSGVVYDFARPNNTTVGSS*

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