| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003706 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0103008 | Gp0088355 | Ga0008095 |
| Sample Name | Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 5107387 |
| Sequencing Scaffolds | 20 |
| Novel Protein Genes | 22 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 15 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → land → forest soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Amazon Forest, Brazil | |||||||
| Coordinates | Lat. (o) | -10.0 | Long. (o) | -62.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000203 | Metagenome / Metatranscriptome | 1619 | Y |
| F001758 | Metagenome / Metatranscriptome | 640 | Y |
| F001975 | Metagenome / Metatranscriptome | 609 | Y |
| F003427 | Metagenome / Metatranscriptome | 487 | Y |
| F007695 | Metagenome / Metatranscriptome | 346 | Y |
| F012439 | Metagenome / Metatranscriptome | 280 | Y |
| F014312 | Metagenome / Metatranscriptome | 264 | Y |
| F014482 | Metagenome / Metatranscriptome | 262 | Y |
| F018438 | Metagenome / Metatranscriptome | 235 | Y |
| F022151 | Metagenome / Metatranscriptome | 215 | Y |
| F036030 | Metagenome / Metatranscriptome | 171 | N |
| F041780 | Metagenome / Metatranscriptome | 159 | Y |
| F042778 | Metatranscriptome | 157 | Y |
| F055474 | Metagenome / Metatranscriptome | 138 | Y |
| F059694 | Metagenome / Metatranscriptome | 133 | Y |
| F065470 | Metagenome / Metatranscriptome | 127 | Y |
| F066797 | Metagenome / Metatranscriptome | 126 | Y |
| F079670 | Metagenome / Metatranscriptome | 115 | N |
| F081897 | Metagenome / Metatranscriptome | 114 | Y |
| F085747 | Metagenome / Metatranscriptome | 111 | N |
| F100618 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0008095_100015 | Not Available | 501 | Open in IMG/M |
| Ga0008095_100073 | Not Available | 523 | Open in IMG/M |
| Ga0008095_100145 | Not Available | 580 | Open in IMG/M |
| Ga0008095_100430 | Not Available | 1156 | Open in IMG/M |
| Ga0008095_101038 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 689 | Open in IMG/M |
| Ga0008095_101235 | Not Available | 673 | Open in IMG/M |
| Ga0008095_102096 | Not Available | 585 | Open in IMG/M |
| Ga0008095_102324 | Not Available | 505 | Open in IMG/M |
| Ga0008095_103143 | Not Available | 633 | Open in IMG/M |
| Ga0008095_103229 | Not Available | 621 | Open in IMG/M |
| Ga0008095_103898 | Not Available | 677 | Open in IMG/M |
| Ga0008095_104735 | Not Available | 587 | Open in IMG/M |
| Ga0008095_105539 | Not Available | 512 | Open in IMG/M |
| Ga0008095_105761 | Not Available | 738 | Open in IMG/M |
| Ga0008095_106244 | Not Available | 555 | Open in IMG/M |
| Ga0008095_106357 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 541 | Open in IMG/M |
| Ga0008095_106636 | Not Available | 783 | Open in IMG/M |
| Ga0008095_106775 | All Organisms → cellular organisms → Bacteria | 695 | Open in IMG/M |
| Ga0008095_107647 | All Organisms → cellular organisms → Bacteria | 607 | Open in IMG/M |
| Ga0008095_108832 | All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella | 530 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0008095_100015 | Ga0008095_1000151 | F014312 | TAIETNKGTANGVVRLWERVKAERFAVTMTPLVGAERLARKTERFSERPDKNG* |
| Ga0008095_100073 | Ga0008095_1000731 | F055474 | MPFRIVAFSRFSLPEAQPFETPDSPSLPVARPHFKNDDRRGSTFQVRYVPPGSLLP |
| Ga0008095_100145 | Ga0008095_1001451 | F085747 | FQVICLTAKLSAGIRGTELREQNRRTVSGLLPGAPFQAHRINAPRAVCWPDSVRSRRLVTAFHSLGTTARFQATIPRSKLPACYFNALPNRSSGPFDRLLLRPNRFAPGPVGLTACGPFPGLRPDTSESASNLHSPLGALTPAGSKRSIRFGSGKLTFRLRPIVLRSPQPFYCVVPAADHRSELATFPEARCS |
| Ga0008095_100430 | Ga0008095_1004302 | F066797 | LNSHQIISSADLGGSSNYSKETNNSKCSTLKTEVAKVFLTTEIAQELVDPNPKDYEK* |
| Ga0008095_100749 | Ga0008095_1007491 | F000203 | MGVRHALFPMPALGALQAASFPTLFSAANGVVGLVAGPSSASPSLDY* |
| Ga0008095_100980 | Ga0008095_1009802 | F000203 | PVPALGASGAAGFPTLFSTASGVSGLVAGPSSASPPLDFE* |
| Ga0008095_101038 | Ga0008095_1010381 | F001975 | KTMASTTTSTQQDLQDQFLSIVSKSQEMALDAIKSMVDTVQTITPKIPAVDVPFADRLPKPQDVVANGYDFAQKLLSSQRKFADEVVKATAPLLPGNGDSK* |
| Ga0008095_101235 | Ga0008095_1012351 | F001758 | VTGERLSQAGWLIPSKAGSQGSGEEAEFTSSSGDVRASSVNAKKGLSXEGR* |
| Ga0008095_102096 | Ga0008095_1020961 | F012439 | SSLIAASTSGVHHSAGNPDPAVTFRPRRFSRPRRFPPPPAFAGLFHPAATSRVCPSGVCPSPRSRTGFPRPIHALLALNADTCDQRPRPRLQGFAPRRECGVGRGGLGPDRSAPLVGFSSSGCSLRATWECLHIPSALDLRRQEPLTVGHRRLGAARIGLPGIRLPTRSSFLA* |
| Ga0008095_102324 | Ga0008095_1023241 | F014482 | DFQPGSLPACTAWSTCKQKRRAIRLSAPRKLGFPRPRLNASWLAACFLLSGTGXLVTAFRSPATTALARRHPFRGQCSQPATSRSPESLPCPVHPWLRYRASGLLRWRPLPRSGPVALPLPGSACRIAYPPLPSGIFASLGIKAFSYACCLPGSPDESARFPLAPRC |
| Ga0008095_103143 | Ga0008095_1031432 | F081897 | WEFAMLSFPCWHLAHPQGGAVSFPTLFSMANGVTGLVAGPSSALQQLDY* |
| Ga0008095_103229 | Ga0008095_1032292 | F007695 | MKGNLRVKRRDPWHGANAPSKTVADLTLSGEDADQQSQRVFAWFADRWRNHQPKQAEKPHSKFSRREALNGPATRPITPLAVENSVGKLAALQCGAPNASTGKRAWRTPI |
| Ga0008095_103898 | Ga0008095_1038981 | F079670 | VKRTLKKGLKVLEMVKRERNKIITIDNSLKLFSILYFFFKKKYKFDLI* |
| Ga0008095_104735 | Ga0008095_1047351 | F059694 | MEFAKARAVAGEEKAVASERFRFGEKAKAAGRLKAMKRKPEKPASGEQRDEAYGAPERGVRYGACPWRARLGIGSLG |
| Ga0008095_105539 | Ga0008095_1055391 | F022151 | NGTERVWNIDPLLVLLKTAGSGERKAIGRFDSVSLSAGIRVSALIAKGQKALNGSEDSRNGRGREEGTGQRV* |
| Ga0008095_105761 | Ga0008095_1057612 | F065470 | MSKGCGATVGDTSGDNPDPESVRRKHGQAARKGGRERGRGNEDTRSLTRRDTGDRSTATLVPKQRQIAHW |
| Ga0008095_106244 | Ga0008095_1062441 | F041780 | PLVAACSPTGMHGLNMAFRMTGPIFLCSPRSPFGKSASTLRTRPASHSNRNRHLETAFVLPCSDFPYPELRGRLKRSQPASSITLLGPIQSRSVPNSLPAAFGVRRGHGHETRFLLAARQSRPILEPPLPFGVSPPPDHCAQSDSDREVYLSRMPDFPLLPERLLVANLTLGSTFQVRYILPGFT |
| Ga0008095_106357 | Ga0008095_1063571 | F042778 | K*SSVQPHSPPACTVLSVAIRSAGRFVCLLPANRFRRSTDRRFQARRSDSRSGPDARDGLSLARNNFRCHGRHSRVKTPGLPLRF*TCRILCPFGPSAPLPEPVSPGIRPHLCFWPVAEFATGSTRVSTGLHSPSGVLPPSGSKRSTGISACQPTFRTRPIAVRSPQPFSISRVSAVDHR |
| Ga0008095_106636 | Ga0008095_1066362 | F003427 | MVKTRSSNHKRVFTWFASWRLQASVEASLEASLEILLPQGAGQPCYEAELTPPAPENSVGKPAANVRLMPAWERER |
| Ga0008095_106775 | Ga0008095_1067752 | F036030 | MSQPIETQIGEIRQYLEWEFPGQVRNAWWDEDIKAPVFEVIYETGCHHVIVDTGFIQACQDAAASLRASELADYMREARTQARRFLILEESGEVHIRSTPL* |
| Ga0008095_107647 | Ga0008095_1076472 | F018438 | MGIDDESSHPKLCSEVADGVTRTIVCLFREPDAGNPPVRFDEREQETESSQTGLRRRYESFVSSHRETK |
| Ga0008095_108832 | Ga0008095_1088321 | F100618 | PAATPAASSDPVSITTTLYDLVAALNAEVDPEDDALVTAAVVHLVNANRARFVGSRKRLAIVDA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |