NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003697

3300003697: Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA - aqueous naphthalene treatment rep 3 (Metagenome Metatranscriptome, Counting Only)



Overview

Basic Information
IMG/M Taxon OID3300003697 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0069861 | Gp0055831 | Ga0003072
Sample NameGroundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA - aqueous naphthalene treatment rep 3 (Metagenome Metatranscriptome, Counting Only)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size19815650
Sequencing Scaffolds32
Novel Protein Genes36
Associated Families34

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available26
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nonmethylotrophicum1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameGroundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomeanthropogenic contamination featurecontaminated water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationS. Glens Falls, New York, USA
CoordinatesLat. (o)43.099444Long. (o)-73.604444Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000734Metagenome / Metatranscriptome915Y
F003877Metagenome / Metatranscriptome464Y
F004925Metagenome / Metatranscriptome418Y
F005048Metagenome / Metatranscriptome413Y
F005632Metagenome / Metatranscriptome394Y
F009688Metagenome / Metatranscriptome314Y
F014988Metagenome / Metatranscriptome258Y
F020134Metagenome / Metatranscriptome225Y
F020183Metagenome / Metatranscriptome225Y
F020700Metagenome / Metatranscriptome222Y
F022154Metagenome / Metatranscriptome215Y
F022577Metagenome / Metatranscriptome213Y
F024407Metagenome / Metatranscriptome206Y
F027192Metagenome / Metatranscriptome195Y
F029638Metagenome / Metatranscriptome187Y
F030637Metagenome / Metatranscriptome184Y
F035541Metagenome / Metatranscriptome172Y
F037587Metagenome / Metatranscriptome167Y
F037756Metagenome / Metatranscriptome167Y
F041780Metagenome / Metatranscriptome159Y
F055278Metagenome / Metatranscriptome139Y
F057498Metagenome / Metatranscriptome136Y
F057921Metagenome / Metatranscriptome135N
F059693Metagenome / Metatranscriptome133Y
F061584Metagenome / Metatranscriptome131Y
F069751Metagenome / Metatranscriptome123N
F070926Metagenome / Metatranscriptome122N
F072008Metagenome / Metatranscriptome121Y
F078329Metagenome / Metatranscriptome116Y
F082737Metagenome / Metatranscriptome113Y
F085747Metagenome / Metatranscriptome111N
F087252Metagenome / Metatranscriptome110Y
F091056Metagenome / Metatranscriptome108Y
F100491Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0003072J53071_100238Not Available807Open in IMG/M
Ga0003072J53071_100622Not Available620Open in IMG/M
Ga0003072J53071_101083Not Available2345Open in IMG/M
Ga0003072J53071_101147Not Available580Open in IMG/M
Ga0003072J53071_101679Not Available554Open in IMG/M
Ga0003072J53071_101894Not Available634Open in IMG/M
Ga0003072J53071_102290Not Available584Open in IMG/M
Ga0003072J53071_102890All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae3490Open in IMG/M
Ga0003072J53071_103280Not Available807Open in IMG/M
Ga0003072J53071_103771Not Available909Open in IMG/M
Ga0003072J53071_104271Not Available632Open in IMG/M
Ga0003072J53071_106446Not Available629Open in IMG/M
Ga0003072J53071_107413Not Available1086Open in IMG/M
Ga0003072J53071_108654Not Available581Open in IMG/M
Ga0003072J53071_108740Not Available613Open in IMG/M
Ga0003072J53071_109432Not Available527Open in IMG/M
Ga0003072J53071_110956All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales1707Open in IMG/M
Ga0003072J53071_111265All Organisms → cellular organisms → Bacteria → Proteobacteria577Open in IMG/M
Ga0003072J53071_112185All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium621Open in IMG/M
Ga0003072J53071_112716Not Available771Open in IMG/M
Ga0003072J53071_113463Not Available631Open in IMG/M
Ga0003072J53071_113501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nonmethylotrophicum550Open in IMG/M
Ga0003072J53071_115249Not Available500Open in IMG/M
Ga0003072J53071_116618Not Available561Open in IMG/M
Ga0003072J53071_116718Not Available1211Open in IMG/M
Ga0003072J53071_117619Not Available569Open in IMG/M
Ga0003072J53071_120207Not Available744Open in IMG/M
Ga0003072J53071_120715Not Available616Open in IMG/M
Ga0003072J53071_121384Not Available578Open in IMG/M
Ga0003072J53071_124347All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium603Open in IMG/M
Ga0003072J53071_128413Not Available509Open in IMG/M
Ga0003072J53071_130938Not Available508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0003072J53071_100238Ga0003072J53071_1002381F004925ELRWTVADERKSQVVSRMIPGNWGKVGSGWLARPLLNRIARFGGGGRIHQFLWPRSRAVSNAKEELGDEE*
Ga0003072J53071_100238Ga0003072J53071_1002383F037756RQALFPVPTFGAHLSMAAGFPTLFSTASGVFGLVAGPFNALRH*
Ga0003072J53071_100622Ga0003072J53071_1006221F005048RSHEPSASNSFEIGLKFEHTTPIAEDCLQDFVVETFASAKADDGLIALVVEPRHVERQGLVRTLRELGRRAIGVATALDAVQLLGREGEHVDTVFIEAESSSLPSLELVEFLAHNHPHVRRVLVGEPSEIAASWVAQATGEVHALLETPCDQEAVHRVLHRLQFTPHDGALS*
Ga0003072J53071_101083Ga0003072J53071_1010834F059693MPIRRSGSGRRETSDSPIVSYGAQDSVGPPRWETSESESGTREVRVHVIRLGGRSRLGASRVFFTGRSQGRVVSKEGASQEEVRSTA*
Ga0003072J53071_101147Ga0003072J53071_1011471F085747FQVICLAAKLSAGMPGTELREQNRRTVSGLLPGTPFRAHRINAPRAVCWPDSVRSRRFVAAFHSLGTTACFQAPIPRSKLPACYFNALPNRSSGPFDRSLLRPNRFAPGSVGLNACGPFPGLRLSTSESASNLHSPLGVLAPAGSKRSIRFGSEKPTFRLRPIVLRSPQPFYCVVPVADHRSELATFPEVRCS
Ga0003072J53071_101285Ga0003072J53071_1012851F100491MVPSDLPAACSPTGMHGQNVASGTGET*ALCSPPLVLANRGSVRRCASALNSGRSPFLDTAFRSTAPRTGLATDPRNCVNVPGLHLRNDPQIRSCSFGTALPPPCGLLMALRGTINIRYPLPDPISGLIIRLRVSAPLRELSFPRDQSPQPGSGL*SLPLQVARSSFTPRSAATVLFITQRHGSSLQIRYFLPGSLSFE
Ga0003072J53071_101679Ga0003072J53071_1016791F082737SDPRYQLAPQPACQV*ACHIQRAGRLLALLPAPGVSPVGDSMLGGTPASLPVRSQNLEAAFHSPTTTSLLPDDRDGVRVPALPLQLCDTISVSPVRSGLHPWPVSRTAWDFYNQNPLLPGPAPLLPAALNRRSPSGFWTPPDQSTRSRWPTGNLPSETPDLPSLPASGYIRYQHQQIIVPAPLR
Ga0003072J53071_101894Ga0003072J53071_1018942F000734VKTFRNAGDVKNGTAGLGTKGNLREKRRDPWLGANVLLKAGADPELSG*
Ga0003072J53071_102290Ga0003072J53071_1022901F041780SK*P*VAACSPTGMHGQNMAHQTAGLKSLCSPRPPFGGSASTLWAQPASHSTRNRNLETAFLLPCDDSPYPEFRDRIKRSQPASSISLPSPIRVRSVLNSLPVALGFRRGHGHKTRFPLASRQSRPILRPPLPFRVSPLPDHNAQSDSDREVYLGKTPDIPSLPERINE*
Ga0003072J53071_102890Ga0003072J53071_1028902F014988MAFAPSSLITGAAVTGLTTPTYIITVDTPPAINAKQYAVTALGGTQTGVDVNTVSKPFSISFFRPVQLRSLPAANPVTGVIKNIPMNQYKLITRKGAQPSANTPAMTARITTTIEVPAGSDTYEPEEIRALISSHFGVGFSTASGIADTVLTGVL*
Ga0003072J53071_103280Ga0003072J53071_1032801F055278PVTSSRRASPSFRVLPSNTYPAVTTAESSHGLWLPTALEESEVHCSRASPTRYVPPSGFGYPLDGFLPRIPCRSCFVPAALLGFPLRRFPLPKGFRGVSAKKNPHTVNLRVTPAPKCQTGQAGLGFWAHTFRKCLANAGFLSRRPPAPPLGFAPSGPSCENLDRDFSQPPLTRFADLTITHQIHRRPRVSVGSRLASTGLAPKYTPAETTLLGFPHRPHPGHSNTTPPGLLSSPRTGPYITADSPVLFGR*
Ga0003072J53071_103771Ga0003072J53071_1037712F030637PPAPSSPLRRIQDSLRCPAACRQDAVTSHEVGCSAECCEHRPCGPIGLPAATSTLRFPARPGGSTSCVVPRLLAKTGSSSRELGLLFRVRTASNLPLARMRGAPPMGSRSQSRYQLRRSTRERGSQPRPMFRPRCFAHPRRLALSTTSWACFIPQPRPGFTFQGFVPATSPVRLVVDPCPPVVDHHLLPPRCRGGSRSGDLAFRALIQVAIRSLRQGV*
Ga0003072J53071_104271Ga0003072J53071_1042711F020700MAACLSLHLRFAGLCPKTSRGVFSDAAAGIAVTPIGLNFPVPFQVIKPEKVRRIL
Ga0003072J53071_106446Ga0003072J53071_1064462F009688LACANRISSEAFQLASAGGCATGLRTRSRHACDFFVRVLTTGSGSATAFDGAFARGHGSRLFTLKLHFIHSPAVSFLTSPALGSFSRGLPSRRVLPDACSLFVRLSAFFFWRLQLFNYRIRQSRPHRADTQ*
Ga0003072J53071_107413Ga0003072J53071_1074131F022577VTGYLSYHMRSNLFQQSKGASDPTLAEPTAGPVTSNPFSSLAWDYTGPIAENVGIWTEWYSTNFNPVTTGAGSVGNQFGAVRNDEFDVRMGWNPGEGGNIVSVFINNQGQTSPFFGAFGSGTPAGGQGQFIHTGVAAWVKDRVVVQLAVAPGVDNLDYKRMTYGVVLGFLPMNTDGMWLMPTFSMLAGNDMAPTAGGTPGVAALSKGGAGYTSQSMGDATRTLFDVRFGFLDHGHWSFNSATGYSWNKETYNDGAGSTLVGIGSTVRVWYDRTYGINAGLNKRLTYDFTDASGVVHPIPSDLGYNVLLVYRQAMNFAWEFGFSNAQTLRLNQNWRNGWSWNIQWHFLY*
Ga0003072J53071_108654Ga0003072J53071_1086541F078329MPAPNRTEQQASFKALKRFSAKQKGAELRGRRLAVLIAEAPTGHAGGGRGWEADHLE
Ga0003072J53071_108740Ga0003072J53071_1087401F020700MTVRLSLHLRFAKLDPGTSPSAFSDAAAGIAATSIRLNFSVPFQAVRPKKVRRIL
Ga0003072J53071_109432Ga0003072J53071_1094321F061584QTRRFPFEGSSNRFSIPRSRHRAAVDSHEVGRSTECCERRSCRRIRLPAPTMTSLFPESLCGVTPPPSPVLLRVRVHPPMSFSSPSEYELFRSCPARFRAERLPWGFVPHRGISTRSPLPSELPRSRPTDPSSAFLTPSTVCSSAHLAGLFHPTTTSGIHLPGVISRCLARPPRR
Ga0003072J53071_110956Ga0003072J53071_1109562F020183MSIVFNTKTYTADSYQKDQVGYIGAAKTVTVKDDFRMLRTAPKPVATFSGLGRTSVKLTRTFTLTGALTPTGDAIIEVSVAVPVGYASADVDALLNDVG
Ga0003072J53071_111265Ga0003072J53071_1112651F024407MPIEVAAGFGLARGFNLSNLFGLSKGKAIGVGTFIVPPPFLPLSNGPKIDYFSHSVVALDGNGLHFSSALT*
Ga0003072J53071_112185Ga0003072J53071_1121851F005632RHVLDGAFGAIEVSPWRAVAARFEYDTEKVNVGLGVDVGFGLRIRAAALKMESLSAGVGWHHKL*
Ga0003072J53071_112716Ga0003072J53071_1127161F035541GDVACSLGYIRSKGMANHRATTIRRSDVKRLALIFTLAILAGALMVPAANAQSNLTNLNNIPVTDTLAVGTFEWDVWSGYNKGFERGRRIGTRLFGSLYDNLEFGMKWGISRTAGPVELALKYKVIDEYNGRFPVSLAVGVEGITGNSQRTHFDPTVYAVLGIHDVKFIGHWWDWYVGVNHNPTGMDTEDNSLFGGFKYWINDDLQFIADYMGYGDNEWYKLTGGFNYNWINHIGFQGWVERDSLAETNVFVLEMA
Ga0003072J53071_113463Ga0003072J53071_1134631F030637SNLPLARMRRAPSLGSRSQSRYQLRRSTCERGSQPHSMFRPRRFARPRRLTLSTTSWACFIPQPRPGLTFQGFVPTAQPNRLVDGPCPPVVDHHLLPPRCRVDSRSGDLAFRALIRVAIRSNRESV*
Ga0003072J53071_113501Ga0003072J53071_1135011F003877VHTAVRNCTGDEGGPFGFGDQVVDPKPPRAAAVKSRGGERRGNVGAMIPTGMIERGERKRTASEASKAD*
Ga0003072J53071_115249Ga0003072J53071_1152491F020134MTPARGAGDICLGAVARVEGRKTPDALHLSPVAREHPSRVLDYPLRPSHYGC
Ga0003072J53071_116618Ga0003072J53071_1166182F057921QAACSPTGMHGQNVASGDGVTLSPLLPAAGFARLRIDALVRVR*
Ga0003072J53071_116718Ga0003072J53071_1167181F022154TPKLYDVYRFADLSGVRNAMKKALAGVLAVALAGVMAGSAMAQVPNVQVYFDGAYTQTQRNCPGYAPFTTPDSLYVVMNNWNMNITGVDFSIQYPPALVYLADKAPDPILSVTIGQSPTGIAISWANCCPPDGFLPVLALKPLVMWGVCDCNQGPQAIVVGGYTPFGKTHPTAIRREDFTEHDGVGMTSLICPGFIAVQPSTWGQVKALYR*
Ga0003072J53071_117619Ga0003072J53071_1176191F037587TRFAALFTTGMHGTEHRSRERRTTASRLPDHRFSSVTGSKP*SALQLSPGRDRMLVTTFRSPATVAAFTASIPGSTFLACHFASRSIDSTARSIFGSATDLRFDPRSAASTPQTRCSFLD*LDLPRPRPPLPFGTVTSLRIKAFCRIGCKLTRLPIPPDLRSLPAAGSITSYGCGSTFPVRYVFGGLLF
Ga0003072J53071_120207Ga0003072J53071_1202071F069751VASGQRTAKSSGRPGAGGRDADESHKRVFTRFANRRCKRQLKQAKRPHSKSSVRKVLDGPATRPITPLAVENSVGESAV
Ga0003072J53071_120715Ga0003072J53071_1207151F087252TAHNTRSLAIRLETGSLLNARLGQPTQRQRRGGSVLKQAAETLHTAESELNRMRWFAYFSNDEQSCWGETPPGSRTWTQFKERLPSLIAALKGDEKRKRFSGDKKPAAVIDGLLRLLSSATSKLRADDFTVDDTDKEKLIGRLRDFTSAISKRFGVRFLVETEEDGTHSLLETVAVPDCETDFALSSCPMDTVAV*
Ga0003072J53071_121384Ga0003072J53071_1213841F057498SVSCSNCHAQGLIPVIDEVREIALANARTSGLNADEVEQLRNVYPTSAEFARIVEGDSQGFYQNALTRARVPTEGVDPMSAVFFRFDQDMRLEDAAGDLGLTADELDNDLNLLNPALQVLNEGSVDRDDFTQFYVDSLCILQVVGDNQVDPALCDAVAANGGIVP*
Ga0003072J53071_124347Ga0003072J53071_1243471F027192MKHLFFAFVLVIALASMAMAQSEAEALVTGEVVSALVLVNVDGDWGVFASGNTYVITPAGFKEPPGPGEGAGVVVGPVGFEVDGIGGEDVVVNLLLPGQMNSDDDASGLPLSNWMYGWNYDNDPGATFTAAGPVVGNAVTLSINSNAASGLFLGATVTVPTTAFPGTYTAQIIGSAAYIGN*
Ga0003072J53071_125611Ga0003072J53071_1256111F070926LNSSLSSRHARPEHGMRRNRGTFSSAPRAGF*PTRINAREMTRLFPARSSNLGTAFHSPAATVLFREPPRQD*RSRPIPSIQLRILPQARSVWNSPPLPLFTERGGSVLPARCPISDPKLPDVHRLPLPFRTFQSLRLKALYR*QSLGKLTLANSPIFLRSPTAPIITNRSR
Ga0003072J53071_128413Ga0003072J53071_1284131F072008NSGYDVIEPYPQATNYASPFSGDTCDQANNGWWTQSATSGGYSWPFLTTSRQQSDGYTNFEGILSACVYVDTTLAPGTTPGKINIQAIVESPGQGGLYSTGSYVNNPLNGVNPYYPLGNNLSLPNYLGVPNIVLTATITVVGPPASITVAAAPTSLNCGEKATITVTVK
Ga0003072J53071_130938Ga0003072J53071_1309381F029638TIRKIDQFGQPLAAGFSIQQGPFWVEVARVNLYNTLASNPCATDGTQGSFNIPGAGTSCSSIGVISPAVFAAGLPAGQYRVVEVSGPNSYCTLVQVYNGNQAQNQANTLPYSGALLTQPVTLNLPDANVYDLQLTFVNSCVTPGGPSTATSQIAVVIGGSTPGLVNTSN
Ga0003072J53071_146936Ga0003072J53071_1469361F091056MRKMMFLLVALLVLGLTVPAFANGSAVDQFSAVKYIRNLSDLAAQYRDHGLSLQLDGYNYEWLIFSDSCIRDNIEAELVVLGRSREHIIDPLAWQLHVDMLNGTIEQINTITDELLTYNFYPNEDKIVEKIAKKANEGTKVLGSIEDELGRGEERNYADLATYGEKLWMVGNDLIC

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