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Sample 3300003668
3300003668: Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM4 Late Sample 5)
Overview
Basic Information
IMG/M Taxon OID 3300003668 Open in IMG/M GOLD Reference Gs0111460 | Gp0101226 | Ga0070395 Sample Name Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM4 Late Sample 5) Sequencing Status Permanent Draft Sequencing Center Published? N Use Policy Open
Dataset Contents
Total Genome Size 161885564 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Archaea → Euryarchaeota 1 All Organisms → cellular organisms → Bacteria 2 All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia Type Environmental Taxonomy Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia
Alternative Ecosystem Assignments
Environment Ontology (ENVO) aquatic biome → coal mine → underground water Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Subsurface (non-saline)
Location Information
Location Lithgow Coordinates Lat. (o ) -33.460524 Long. (o ) 150.168149 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F054136 Metagenome 140 Y F064746 Metagenome / Metatranscriptome 128 N F064893 Metagenome / Metatranscriptome 128 Y F072990 Metagenome 120 Y
Sequences
Scaffold ID Protein ID Family Sequence
LSCM4L_1006169 LSCM4L_10061695 F054136 MIENKAQLLANLAYIGSKVEAKTSVYLFAGVAFQWHGLKETTRDIDICCSYEEADRIVSILRMFGRMESVTGINDIHFLRIYLKSFTLQIFIKEIWMGDEYRLLEAADCDALTFGGITFLIPDIKTLLMIKDRQIQALYNEWMKLKGEKCT* LSCM4L_1011221 LSCM4L_10112211 F072990 MAPESLSEVVRSLTPQEQDAVRQFIDYLKRRDAAASPDSPFLRAADEFLSEHPELLQRLAQ* LSCM4L_1030400 LSCM4L_10304002 F064746 MSKTILIALVILCAVMVCGCLDTAVVQKSVTIGGHTFTAALDDKWATSVQGEAVPYVPANLEDQYGIPDGAYDWTGLEDYGAFSYKSGQPSGSITKYGFVYIFILNPNEDLADSSSIDILRHAAYLIIDPGNHRNAVLGGDLTEKEIEYNGKEAYLVEVSGELKEDHINDNSYGAISFFLDNDTVALIGVHTTNNYGISAWDVIESITVT* LSCM4L_1033136 LSCM4L_10331362 F064893 MSKIVRYEFMGSWLYFWLLSITVIGIPLALLYLISGTLRIEHQMDDPERFVESFRAGRLAPGPGVSSM*
