NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003654

3300003654: Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.8 micron filter



Overview

Basic Information
IMG/M Taxon OID3300003654 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0112339 | Gp0107769 | Ga0062110
Sample NameSubglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.8 micron filter
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size28501416
Sequencing Scaffolds42
Novel Protein Genes45
Associated Families41

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → Viruses → Predicted Viral4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niabella → Niabella drilacis1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubglacial Freshwater Microbial Communities From Lake Whillans, Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biomesubglacial lakelake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationWest Antarctica
CoordinatesLat. (o)-84.24Long. (o)-153.694Alt. (m)N/ADepth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F000376Metagenome / Metatranscriptome1216Y
F000473Metagenome / Metatranscriptome1097Y
F000625Metagenome / Metatranscriptome977Y
F002501Metagenome / Metatranscriptome553Y
F004408Metagenome / Metatranscriptome439Y
F004727Metagenome / Metatranscriptome426Y
F006895Metagenome / Metatranscriptome362Y
F007028Metagenome / Metatranscriptome359Y
F007263Metagenome / Metatranscriptome354Y
F007364Metagenome / Metatranscriptome352Y
F007365Metagenome / Metatranscriptome352Y
F008304Metagenome / Metatranscriptome335Y
F009327Metagenome / Metatranscriptome319Y
F010028Metagenome / Metatranscriptome309Y
F011563Metagenome / Metatranscriptome289Y
F014140Metagenome / Metatranscriptome265Y
F016970Metagenome / Metatranscriptome243Y
F021769Metagenome / Metatranscriptome217Y
F023107Metagenome / Metatranscriptome211Y
F023851Metagenome / Metatranscriptome208Y
F023957Metagenome / Metatranscriptome208Y
F026883Metagenome / Metatranscriptome196Y
F036123Metagenome / Metatranscriptome170Y
F037095Metagenome / Metatranscriptome168Y
F043392Metagenome / Metatranscriptome156N
F045131Metagenome / Metatranscriptome153Y
F045788Metagenome / Metatranscriptome152Y
F046392Metagenome / Metatranscriptome151Y
F049700Metagenome / Metatranscriptome146Y
F051089Metagenome / Metatranscriptome144Y
F056888Metagenome / Metatranscriptome137N
F063593Metagenome129Y
F070993Metagenome / Metatranscriptome122Y
F076008Metagenome118Y
F079981Metagenome / Metatranscriptome115Y
F085603Metagenome / Metatranscriptome111N
F087244Metagenome / Metatranscriptome110Y
F100371Metagenome102Y
F101030Metagenome / Metatranscriptome102N
F105151Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SLW08_100337Not Available11451Open in IMG/M
SLW08_100509Not Available6359Open in IMG/M
SLW08_100629All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium4882Open in IMG/M
SLW08_100990All Organisms → cellular organisms → Bacteria → Proteobacteria4496Open in IMG/M
SLW08_101297All Organisms → cellular organisms → Bacteria3299Open in IMG/M
SLW08_101327Not Available3249Open in IMG/M
SLW08_101524All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2958Open in IMG/M
SLW08_102855All Organisms → Viruses → Predicted Viral1921Open in IMG/M
SLW08_102867Not Available1917Open in IMG/M
SLW08_102936All Organisms → Viruses → Predicted Viral1886Open in IMG/M
SLW08_103275All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1760Open in IMG/M
SLW08_103468Not Available1688Open in IMG/M
SLW08_103642All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1627Open in IMG/M
SLW08_103722All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1603Open in IMG/M
SLW08_103863All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niabella → Niabella drilacis1566Open in IMG/M
SLW08_104695All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1375Open in IMG/M
SLW08_104814All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium1351Open in IMG/M
SLW08_105511All Organisms → Viruses → Predicted Viral1708Open in IMG/M
SLW08_105983Not Available1161Open in IMG/M
SLW08_106631All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1085Open in IMG/M
SLW08_107247All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1023Open in IMG/M
SLW08_107667All Organisms → Viruses → Predicted Viral1816Open in IMG/M
SLW08_108309All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage929Open in IMG/M
SLW08_108819All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage896Open in IMG/M
SLW08_109052Not Available881Open in IMG/M
SLW08_109217All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes871Open in IMG/M
SLW08_109392All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage861Open in IMG/M
SLW08_110555Not Available799Open in IMG/M
SLW08_110590All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage797Open in IMG/M
SLW08_110992All Organisms → cellular organisms → Bacteria778Open in IMG/M
SLW08_111128All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium773Open in IMG/M
SLW08_111405All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage762Open in IMG/M
SLW08_111457All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage760Open in IMG/M
SLW08_112542All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria716Open in IMG/M
SLW08_113623Not Available676Open in IMG/M
SLW08_113856All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage667Open in IMG/M
SLW08_113955Not Available664Open in IMG/M
SLW08_114000Not Available662Open in IMG/M
SLW08_114115Not Available659Open in IMG/M
SLW08_114415Not Available649Open in IMG/M
SLW08_114419All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage649Open in IMG/M
SLW08_115636All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium607Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SLW08_100337SLW08_1003372F023957MSKTPYEIRLELLQEARAILQARASKPEYMPTTEDIIAEADKLNAFISSKTTQR*
SLW08_100509SLW08_1005097F007364MRQRENNMGYSTFTEDQITEFIEMAQEMGIGPSMRALGYPKSYHTARKWHEQRHVAMPTSNTLAQMSKQLDIFYGDKEKVLAAQAVIDRTVEALYQDDLTSDDINKLSNALDLAIMDILNEAKMRSSSIKESLRVVQN*
SLW08_100629SLW08_10062910F000473MENIKMTNNDHFKYGVNEWTGEPNKPVFYSNEMSKRVRDIKRPVHNLQMDIVQYPEFLAIRLYEDNFIQFDGIKKEMVIDYVSKVKRLIESYGVRCEMEGRPSERILRSN*
SLW08_100990SLW08_1009905F000376MSTYQEKAKECKCCGKHIPLPTVLKEYNGIVVCPTTFSNIAEYKRLWVSFGSRPAGNIRKHFSDYVQQIVEKSTGEQNE*
SLW08_101297SLW08_1012973F037095MAKLDLNRDGKVTMVEEILAAVGTYARAFLAAVTALFMYAEANNLNMDLGDLLLGGLAAIAPVILKALSPTNKEYGFKSKK*
SLW08_101327SLW08_1013272F004727MKVNISYHDNESLTVEEIVKYAVSNYGKAARVEITPESGLAYDYIYHGLRQLITQEQVSLFYDTDSYQIDIKKLRADVLYKVTEILDSVIIDNEGRLTGI*
SLW08_101524SLW08_1015241F007365MNYSMKEMAIRDYISSVDFKSNDWSHNKICEDMKVFLGEIPSFECFYKKDVMVNEVSGESKEFVTVDKIQIVFTDLDSKFKKLEFIIGDKI*
SLW08_102855SLW08_1028556F063593MAHGLEITRDGKAKMAYSNRETPWHRLGVSMVGLQTAEAMLSAANADFDVVLTRVASVDADGAFILNPDGSPVLIDDSRATVRVNPDGTFDGLATVGTRFAIVQNKECLDYALAVVGASKGDAVVD
SLW08_102867SLW08_1028672F000376MSYQEKAKECKCCGKHIPLPTVLKEYNGICVCPTTFSNIAEYKRLWLSFGSRPAGNVRKHFSDYVQQIVEQSIGE*
SLW08_102936SLW08_1029361F070993VGAIEGVAVAGDIFTAIASGGGEGLAYQVGQCVLMNSHAPDPGFMSIRFTYDEGLNEFASYISNKWIRDWNGMTYDSYVNDNAGLNIQSGENFYPVNFFTDEGTVTWSGANIINGVEAPNGSLFLAQVANSTEPPG*
SLW08_103275SLW08_1032753F007263MLAQQIDSNEFYEIMDEQFYCCSQSQFIYYCKLHGEQMGCQFCEFNPYERCECE*
SLW08_103468SLW08_1034683F045131GLYDSGYNGSMAGVLHVTCGHARIKQGTRIGQYLSFNAEALHSYDGDYGVGKAHDAKYV*
SLW08_103642SLW08_1036425F014140MNTYIVKLNVSLEVMAFNEEDAKEYVSDIFSIDDEIKSVVIVKIHQK*
SLW08_103722SLW08_1037221F079981MATALVALEGVLKTETGDPIPEGIKLYRILVEHYRIVITSDLSRKATEHWLRSNLIIGYADIYDDRYFYEGQELRLRQLDMALALGRVDLFIDVDSDYCAKALEKGISVVMFASPRFVRRTRMVRQWDHLKKEVENQRDALLTAHVNSMPPKEYE*
SLW08_103863SLW08_1038633F045788MLVERNVESRNFPMDSLYKAGMENVKDNIEFYFDKPYTCESVIQELFIRGIIDYIDKNKFPYLEK*
SLW08_104695SLW08_1046951F009327MRGTKVQGRFKIDFETKSMDEGMVDELRDPVGNEVDWWLWDNAALQADYETWVDPIYDVSNQTDGQGRRWNEPFKFPVMLAQHQRGSNTLNERGFYTVDTLRIVAAVADVNRLLPNIITAPTLHIKDRIVFQGAVFVPTLVNPRGLYSTRYSVVTITCNQVNSEELVNDPQFQSYAN*
SLW08_104814SLW08_1048144F023851TCSTAKLEPRWVVILAGRTNGSDYVKEVILKKRYLGADITASELLV*
SLW08_105511SLW08_1055112F010028VTIRKQWTGRAPELVVVDFLDLVDAGETVPDKANFLKGFGRRHDVPLMVLHQTSRTAGADGRKLTMSSGAYGGEQQATMVIGVRRKKYEIAAEIHELVEKLDRSHSERATERLELLRYEQKIHEHTLTINLLKNKRPAGQLVDDIDFELDMRTGKLTDLHGELPRTYRQETMNWQDVGEDF*
SLW08_105983SLW08_1059832F085603MKVEIEFNTDNAAFEDSFLMEITRVLQSAKAAIKDSENTTMIRRMIRDSNGNRIGTVTIKHDMPYSGMTAAREI*
SLW08_105983SLW08_1059833F101030MTLTQFQEAFTIAKSTKSLTDVDDSNLYGFGLDDFKPVHTTIDAVAKTIRWQALQFDGNWNAELLDEVAKCGRRNFIVLG*
SLW08_106234SLW08_1062343F011563VSDVNADIRVDVSTTAAIAALKNLQRQLSNFHQSVAKNSVAAAAAQRGLQTNLMRSIADTGMFTARMGNIRTSTESFTHALENNKLSMGQYFKYAGASTKTFGRLFKTQFDTIGKVAEERVKKLQTQYIKMGRDSSGAMKAMAITPHTLNMKDLSTQTAIAAQKQALFNQLIK
SLW08_106631SLW08_1066311F036123ENAMLVRMTRDNMRYDVKGHTFTKSHPFVGMSEEEAQSIFDTEEGFRLATPKEVQDFYH*
SLW08_107247SLW08_1072472F079981EGVLKTETGDPIPDGIKLYRILAEQYRVVITSDLSKKATEHWLRTNLVIGFADIYDDRYFYEGQELRLRQLDVAMALGRVELFVDADADYCAKALEKGVTVIMFASPKFVRRSRMIKKWETLREEVEKQRDALLEAHVNSLPKKYE*
SLW08_107667SLW08_1076672F021769MNACGEHAEKSIINSLNERLKPYTYDSGVKGLLESLNDDMLNHELLYELKSLYNVLNTKNQGELYRQPINVLLQTINLESDQDRMSKVLNELAIYDWVPEIKLFVYNLTKSPEQRTNLLSGGRGESVFTIVESVEDGHVALIRDSWFLLTENVIEKTLLETHVKNEEELRSLRMIESAMKYATISDDRVNFRISEYLTIGLSVGKKGVVFINDDELNEETTLESLFSSPIIPIVNKNFYPILLEVSQNMDKFVELDVVKKVNNLINPYLECFAFNYKNTTFLYRCDERYGNS
SLW08_108309SLW08_1083092F087244GSPGGPGTSPEEVVYLNLFEITFVLPVLLQAQGRNTLLLLENAQSITMDLAPDIANTTEQRFKYTTRAFMGVPTATTAKFTIKFQVNVNNGGSVENWNTLRAWYDLVWNSQTGYMHYKSDIIGTIIVNQHDKKGFVLRRVTFQNCQLHTLTGTALDWAQSTIQDVDATFVADYWIDEYIDNNFAISPPLISGY*
SLW08_108819SLW08_1088191F026883MMPLKHILKNKLLLQKHFHTQESAMDNWPYWMFEENISLVNEILEEEESNQKKQEGDNPMGNFDANSMMKNASNMTSNMKMPTF*
SLW08_109052SLW08_1090522F037095MAKDINKDGKVTMLEEILAAAGTYARAFLSAAIALYMTGNTSPRDLLMGGFAAIAPVILKALSPNHKEYGFKSKK*
SLW08_109217SLW08_1092172F002501MYCRKCNGRVFVDRVFSQKLHMELFCIMCGFRVMANKETSKFGKWLSQKEEANQKTYGISS*
SLW08_109392SLW08_1093922F006895MIGDKFNFEDVFFRDLTVCVLDTFESRIRWVNRFTAGDVEVNVPFYYSLSGDERFLLDSFIDDIASNNRYVELNTDIIPRGHLTLMGFDIKSDEYANPNVWLKMVVENDVEIKRILAKVRAIPISVKYDLVITLSSEVDVFKCSQVIMDTLWLYQYMNFEYNFMKIDAILIVPDTETIEIVREKTMSSENNITLKLSFEVHTYYPAIRKDRTDSNYIIIPKRSKWF
SLW08_110555SLW08_1105552F100371MSNVTTFNADLPAHLRNVPIDDFTKAFAFSGGSTKRISLRGRVFRLVDGGKEIAKNTESFMDVVIVNGTKTVQKTWYAQEYNAE
SLW08_110590SLW08_1105902F007028MPKISKSAQEHSSSGSPVDNVVSIIAGDISLTTAPILICGVNRKINIGNFENIDVYAAVAIPLPNASFEDREGLRLMIEDAAAYGFSAVSKETGDRYSLIKESQQGK*
SLW08_110992SLW08_1109921F000625MPHTVRETIRLLVDSTMETLDVLLAASDRELPMPSSHVCAQGRDVWALITNDIDHEKIHSGQVIEGRYEARATASPMERLLAEWFEERARFIGSLIGMTDDQFNAATVEGGWTYRAVARHVLLIEQDSLKVLAEDQAARGED*
SLW08_111128SLW08_1111281F049700MPTKLNIDTGGTFTGKKLLEKHQKNEYTHVSNYKEAVCLNCLKKDVAGATVAMICSDCAGVRGRETLLAVISTKFYGLCLFCAKYKFNLEEINARFCMPCHRKIANVCKDYNKK
SLW08_111405SLW08_1114051F004408LSESINKLIEEAKKRKVSETTDLNFLKFLSKSQVDSFYALTNEEQESTKLHINESSYFTQKEVLSLISESLSTKNESLEERIIRLMPENVKPIWGQLNESSKKSILSQARLYPEDVLTTESQVDHFWSTRKLKTNESVTKKLVSHESLIQEDKLSDSEVQAIMERFKNI*
SLW08_111405SLW08_1114052F046392MSHIRIDKQKAMKKWSPVLENMGVIGEDRLEWMSEYAEFHSINENAYANASNVSGM
SLW08_111457SLW08_1114571F076008MNFFWQKTKGLKADIERHRAKEQELLTKINELEKPEHQGDPMSIAAIRTYRRFLYMLQQSKADVVSKLGK*
SLW08_112542SLW08_1125421F000264TNSHMSAKLYKSEAFMRKRYTMDKKTPEEIANECGCTVETVYVHLAKMGLRKSKR*
SLW08_113623SLW08_1136232F056888MNVSEVLDTGKTFEKSNPLKAGDKLTIQSFKVRYVEGLGAEIAEIGTTEGLRHSFGKTVVGQAKSQYWNDVVEKCVKKDATDGLDVYVVEREAEKTGRKMIALSMFEPRHTP*
SLW08_113856SLW08_1138561F051089TLYNSVLYGRISTTLIAELNRLANGGAYPLPKNFKGLGGAVNAWAGTVGKGLLGALNYKANPARTPINYKGLGGVCNELAGTTDKSPIAALRSIAS*
SLW08_113955SLW08_1139551F105151VQYCDDMLNVSIQDVLNDYDRIKKDLAKYNRDKNSELIQNLKEIQIGTLSEKQLDNATKFLKNVGEDELTAYLLYVLDNVPDVGGAKVKKFLLGFEDVLRTIKKINKPGAGKEKK*
SLW08_114000SLW08_1140002F023107MDTISLTRTVQFVGDYFTLMTTVVLEEKLRLADEEDEDFAVRVASVFMKEYYGFDVEAVSNEIGVVDE*
SLW08_114115SLW08_1141151F043392MEIVSKDYHHNGSGAPFVVAIVDDPADGDTKLVIMFDERDCTAVFSLDLLIEEEDISARGNGYDGSRYEKLRDDLWDGFSS*
SLW08_114415SLW08_1144151F008304GTDKAIFGYGISGTLSNVSMTNLVSNTGVVSADVTGVGTARYGPAAVGYGGDKAIFGYGFIPGEASMTNLVSNTGIVSADVTGVGTARFYLAAAGYGGDKAIFGYGYVNTSLTNLVSNTGVVSADVTGVGTARHAPAAAGYGTDKAIFGYGYTTVVVSMTNLVSNTGVVSADVTGVGTARINIAAAAFGDKAIFGYGAIVSMTNLVSNAGVVSAD
SLW08_114419SLW08_1144191F016970SWILLSENTIEKTLLESHVKDEESLRMLRTLETAMKYSYVTEDRVNFRISEYLTIGLSVSKKGGFYINDDEMNAETTLESLFSSPIIPIVNKSFYPLLVEVSKNMDKFVELDVVKRVSNLINPFLEVFAFNYKNNTFLYRCDERYGNSFFRYESCSEIINEVRNELNYDLTYFYENKLSKEVLVKRKLEDKEREITLKLEDVNFNISKVKSSIQM
SLW08_115636SLW08_1156361F014140SMNTYTVKLNVSLEVVAFNEEDAKEYVSDIFSVDDEIKSVNIVKIQQK*

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