NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003615

3300003615: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_110m_DNA



Overview

Basic Information
IMG/M Taxon OID3300003615 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046785 | Gp0091512 | Ga0008830
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_110m_DNA
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size125615048
Sequencing Scaffolds11
Novel Protein Genes13
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC21812
Not Available5
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004164Metagenome / Metatranscriptome450Y
F010921Metagenome / Metatranscriptome297Y
F026538Metagenome197Y
F029239Metagenome / Metatranscriptome189Y
F035724Metagenome171Y
F039110Metagenome / Metatranscriptome164Y
F043633Metagenome / Metatranscriptome156N
F046847Metagenome / Metatranscriptome150N
F057395Metagenome / Metatranscriptome136N
F058917Metagenome / Metatranscriptome134Y
F059474Metagenome / Metatranscriptome134Y
F060929Metagenome / Metatranscriptome132N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26271J51732_1002838All Organisms → Viruses → Predicted Viral4603Open in IMG/M
JGI26271J51732_1008184All Organisms → Viruses → Predicted Viral1995Open in IMG/M
JGI26271J51732_1011504All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC21811502Open in IMG/M
JGI26271J51732_1011585All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC21811495Open in IMG/M
JGI26271J51732_1019768Not Available969Open in IMG/M
JGI26271J51732_1025483Not Available796Open in IMG/M
JGI26271J51732_1027124Not Available760Open in IMG/M
JGI26271J51732_1041973All Organisms → cellular organisms → Bacteria → Proteobacteria558Open in IMG/M
JGI26271J51732_1042536Not Available553Open in IMG/M
JGI26271J51732_1044561All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580536Open in IMG/M
JGI26271J51732_1045225Not Available531Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26271J51732_1002838JGI26271J51732_10028383F039110MSKAVSKKADAKKTSAKYQLKALRDGSHGIDGGIYTYKKYDIITLSKKGHFDSMKELACFDEV*
JGI26271J51732_1002838JGI26271J51732_10028387F058917MDKLLKALEKESKDIRSADMVVNGKIHQIYYRIMSGDDHARALELSKKTKNIKETDGSTTELTYYDDDLLRCXIIYFQLLDKDGSRVFTDLPKIQWIKDNITYETASYLAAVMGLKSVSDIVEEQQEALKKMNG*
JGI26271J51732_1008184JGI26271J51732_10081843F059474VKHXTVVSTDDPAIDLANSDVSAYIDSHDLKHLSFKAGEEPTTFHLGTITFMKFAEIKDKHISFDLGEAGQEIKTNLFGLTADSLRYSLKKADNLPFPIKVERGRLSDTTMDKLARLGIVEELGNVALSLNGFGDDEEKK*
JGI26271J51732_1011504JGI26271J51732_10115043F060929ELVIDKVDPQGISKPIVRAIFSMNQDKLPSYEGIYDPAKDEYIVVRLNNVISNEVTDNLSVDIYRDEYVAALKNEIDNAYVDDLRSLADIEYNPQVIQFRN*
JGI26271J51732_1011585JGI26271J51732_10115851F043633MDFRKIVLNFFSVLNSIYLGLVIYIEFFMENLTKEPYEIYYDLWMYVFVGYCAILIFNYAMFGKVTLWNFKSNX*
JGI26271J51732_1019768JGI26271J51732_10197681F046847MADEQTEQVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELADILGVDSIEQARELINAKRETDEANKSDLDKAAELIQTLNSTIDGLESNNKMMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFI
JGI26271J51732_1025483JGI26271J51732_10254831F029239LTNSNGDNSLDGLVVDWHLANSEMGFDNYVEPTSDYQSTYALAA*
JGI26271J51732_1027124JGI26271J51732_10271242F046847MPDVDKTVEVETPKTENEVVLSQSKLDKLIDKGFSKGANRAKTELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELIQTLNSTIEGLESNNKNMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIDQLKGDKPYLFSGGEVQPKRVD
JGI26271J51732_1036532JGI26271J51732_10365321F057395TTNCKSTQPGMNFSNSTGEIYVESWFDLKDNKLLKQVFTKYGCVPSKRLISKETWILIN*
JGI26271J51732_1041973JGI26271J51732_10419732F026538MYKLNEDSIQRLSDNASVPIADGNRDYQQFLQDVKVNGLTIVEGADVIE
JGI26271J51732_1042536JGI26271J51732_10425362F010921MALNAKGGVKIIEGKAYIHPLSIQEIEFLLNLLANTEHKGSELQKVMQVTYKLREEY
JGI26271J51732_1044561JGI26271J51732_10445611F004164QAEEDLKYSYEHDSIGDKYDAEGDITFRNHKDNGVVFEYAHVNINWKGGFFKSSITDDFIQKKPIQNGLVLYDITEGNQIKGYSVFARHIQIKNYPVGFETKKITVDEGRHPDFSDYDWIFKFKVASMENLKMNDQSHQAIYTKLWGSRPTSTTNCKSTQPGMNFSNSTGEIYVESWF
JGI26271J51732_1045225JGI26271J51732_10452251F035724MIFKYPTLASPTTTLTFTNNPESPYEREVIKHNSSVQMEDGSFFVYSRSVTNYRYTISVVLTSESERDSLESFYDSTVNGMEKTFSYTDPYSDSYTVRFEDELHISEIFKDRMYRATFNLIQTA*
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