Sample 3300003600

Basic Information
IMG/M Taxon OID	3300003600 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0091513 \| Ga0008831
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_120m_DNA
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300003600 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0046785 | Gp0091513 | Ga0008831

Sample Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_120m_DNA

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	173073952
Sequencing Scaffolds	35
Novel Protein Genes	35
Associated Families	32

Dataset Contents

Total Genome Size

173073952

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	1
All Organisms → Viruses → Predicted Viral	5
Not Available	16
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Borreliaceae → Borreliella → Borreliella bissettiae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Borreliaceae → Borreliella → Borreliella bissettiae

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal inlet → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003286	Metagenome / Metatranscriptome	496	Y
F004164	Metagenome / Metatranscriptome	450	Y
F004630	Metagenome / Metatranscriptome	430	Y
F011736	Metagenome / Metatranscriptome	287	N
F012582	Metagenome / Metatranscriptome	279	Y
F015265	Metagenome / Metatranscriptome	256	Y
F021863	Metagenome / Metatranscriptome	217	Y
F023637	Metagenome / Metatranscriptome	209	Y
F026538	Metagenome	197	Y
F027810	Metagenome / Metatranscriptome	193	N
F033048	Metagenome / Metatranscriptome	178	Y
F035962	Metagenome / Metatranscriptome	171	Y
F037260	Metagenome	168	Y
F042172	Metagenome	158	Y
F043154	Metagenome / Metatranscriptome	157	Y
F046020	Metagenome	152	N
F046847	Metagenome / Metatranscriptome	150	N
F047114	Metagenome	150	N
F051972	Metagenome	143	N
F057436	Metagenome / Metatranscriptome	136	N
F061392	Metagenome / Metatranscriptome	132	N
F063751	Metagenome	129	N
F063767	Metagenome	129	N
F066454	Metagenome / Metatranscriptome	126	N
F066842	Metagenome	126	N
F067831	Metagenome	125	N
F073643	Metagenome / Metatranscriptome	120	Y
F078263	Metagenome / Metatranscriptome	116	N
F084823	Metagenome / Metatranscriptome	112	N
F087741	Metagenome / Metatranscriptome	110	Y
F093903	Metagenome / Metatranscriptome	106	N
F100510	Metagenome / Metatranscriptome	102	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
JGI26272J51733_1000370	All Organisms → cellular organisms → Bacteria → Proteobacteria	24705	Open in IMG/M
JGI26272J51733_1001574	All Organisms → cellular organisms → Bacteria	8715	Open in IMG/M
JGI26272J51733_1002788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	5643	Open in IMG/M
JGI26272J51733_1004818	All Organisms → Viruses → Predicted Viral	3642	Open in IMG/M
JGI26272J51733_1007314	All Organisms → cellular organisms → Bacteria → Proteobacteria	2638	Open in IMG/M
JGI26272J51733_1007919	All Organisms → Viruses → Predicted Viral	2479	Open in IMG/M
JGI26272J51733_1009079	Not Available	2222	Open in IMG/M
JGI26272J51733_1010712	All Organisms → Viruses → Predicted Viral	1952	Open in IMG/M
JGI26272J51733_1010791	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1941	Open in IMG/M
JGI26272J51733_1013446	All Organisms → cellular organisms → Bacteria → Proteobacteria	1617	Open in IMG/M
JGI26272J51733_1014285	Not Available	1537	Open in IMG/M
JGI26272J51733_1015111	Not Available	1467	Open in IMG/M
JGI26272J51733_1015948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Methylophilales bacterium	1400	Open in IMG/M
JGI26272J51733_1015974	Not Available	1398	Open in IMG/M
JGI26272J51733_1016556	Not Available	1358	Open in IMG/M
JGI26272J51733_1018759	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1228	Open in IMG/M
JGI26272J51733_1020572	All Organisms → Viruses → Predicted Viral	1143	Open in IMG/M
JGI26272J51733_1021183	All Organisms → Viruses → Predicted Viral	1119	Open in IMG/M
JGI26272J51733_1021934	All Organisms → cellular organisms → Archaea	1090	Open in IMG/M
JGI26272J51733_1027901	Not Available	916	Open in IMG/M
JGI26272J51733_1031521	Not Available	841	Open in IMG/M
JGI26272J51733_1032675	Not Available	820	Open in IMG/M
JGI26272J51733_1033688	Not Available	804	Open in IMG/M
JGI26272J51733_1035609	All Organisms → cellular organisms → Archaea	774	Open in IMG/M
JGI26272J51733_1042883	Not Available	683	Open in IMG/M
JGI26272J51733_1045646	Not Available	656	Open in IMG/M
JGI26272J51733_1050319	Not Available	618	Open in IMG/M
JGI26272J51733_1051191	Not Available	612	Open in IMG/M
JGI26272J51733_1056789	Not Available	574	Open in IMG/M
JGI26272J51733_1057890	Not Available	567	Open in IMG/M
JGI26272J51733_1057915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	567	Open in IMG/M
JGI26272J51733_1058111	All Organisms → cellular organisms → Archaea	565	Open in IMG/M
JGI26272J51733_1064536	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Borreliaceae → Borreliella → Borreliella bissettiae	530	Open in IMG/M
JGI26272J51733_1065927	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	523	Open in IMG/M
JGI26272J51733_1070398	Not Available	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26272J51733_1000370	JGI26272J51733_100037015	F026538	MYKLNKFEDSYSITRLSDNASIPQAEGNRDYRQFLQDVKVNGLTIVEGADVIEPDYVA
JGI26272J51733_1001574	JGI26272J51733_10015741	F078263	MELLHDSDGLEGSLDCQLKRLEEKIETXQPVALMKXLHRIDDEIKHFKDVEITTNTVVSSVKEHXETIKKLEERTRDKFAEMTSQNKATEAMVADKHNDLISKINGISSRVDNLEEKIELAVRELKSEARKTSFLRKLLWLD*
JGI26272J51733_1002788	JGI26272J51733_10027884	F004164	MAYLHTLRLIFFLLLPIYGQAEEDLKYSYEHDSIGDKYDAEGDITFRNHKDNGVVFEYAHVNINWKGGFFKSSITDDFIQKKPIQNGLVLYDIXEGNQIKGYSVFARHIQIKNYPVGFETKKITVDEGRHPDFSDYDWIFKFKVASMENLKMNDQSHQAIYTKLWGSRPTSTTNCKSTQPGMNFSNSTGEIYVESWFDLKDNKLLKQVFTKYGCVPSKRLISKETWILIN*
JGI26272J51733_1004818	JGI26272J51733_10048184	F046847	MPDVDKTETVNTPKTENEVVISQSKLDALIDKGFSKGAKRAKSELTEQLGVDSFEQARELILAKKEADDANKSELEKAAELISTLNSTIEGLETNNQKIQADMAIQKVVSDNGIKDADYFKHLLAQASRSEDFNQDEFITDLKGVKPYLFKGADNQPKKVDATSNRASLDVNDRIKSTKTMAELRALQNEI*
JGI26272J51733_1007314	JGI26272J51733_10073146	F073643	MMIVNVKLESVETVEEFLARGNKIEKSEKVLGSKSLNLFSRYSANYRAGSGKTRMGKNGSGKARMSESYXXIKXLSAT*
JGI26272J51733_1007919	JGI26272J51733_10079193	F066454	MSIRLDVLILINSGVTDRSEIMEKLGVNIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDXVXXSELXNXWNELTDYYLPYEGDKEFTGSNDFFSL*
JGI26272J51733_1009079	JGI26272J51733_10090796	F087741	MKITSDVXAELQKIRSAIDDAYNKLDVVMYDRVTAAKTTYKPSNPSEKITENFSYISEKLKFIQDESELVGEE*
JGI26272J51733_1010712	JGI26272J51733_10107122	F046847	MADEQTEQVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELIQTLNSTIEGLESNNKNMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIEQLKGDKPYLFSGGEVQPKKSMRLQTEHL*
JGI26272J51733_1010791	JGI26272J51733_10107916	F021863	INRGNKIMARKKKKDTPFHIAHNYKQYELKDGTKFWAKDDPDAELYRKKMGEIK*
JGI26272J51733_1013446	JGI26272J51733_10134462	F011736	MENKNIFLMIFFYCTINLSYAKDLDTNSKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKXAGNCDLDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
JGI26272J51733_1014285	JGI26272J51733_10142851	F063767	RPVFCKLYPLVENKSNRLVMNNWGYLHCPKSQHYELDKIVEGKYHYKLKPKVRKHNKREELILDDEIDNVVHQIWLQSKDSIIQRYGQEYYNRIKNEMKQTIKHEFF*
JGI26272J51733_1015111	JGI26272J51733_10151113	F067831	MKLNYFSFNNYSSSIVTQSLQAAAPFLTGSNPEYWSGKGDNYGVIAGYDWVPSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVMPPLGLVGDITASLDIDGFTSSIYVQPSYPTPVPDFDVPNTTFVLRFGFDSASPIDYLASDKREFRNFASSSGIESLMPRKMADLPDGFSNGVGVPDVLIKDPTVDYQTLLMNSFQFYDITDDNKDYLLSQSYCEEFIQPDLNYNGAYYSEVRGIMMLTPQENIFLQPRNPITADVNVFQT
JGI26272J51733_1015948	JGI26272J51733_10159481	F093903	MRLIPLGIITFLLGGCFFQPVEDFVDQMDDQYFADEFNYIPTEIKPYDKKASMELIWENKVGDNEVNNFNLVFSEEFVIAATSDGSVRKMKINSGETV
JGI26272J51733_1015974	JGI26272J51733_10159744	F004630	KMNNQKLISEYYREDKAVAKIYRVITDMDGDHSYYSITYKDKDGVRLGTEDFPFKSLQYVEDAAENWTLGIKVLYG*
JGI26272J51733_1016556	JGI26272J51733_10165562	F042172	DKKISKETENTGKHDSKTFFIKELRIVNLEVKARVSSVKRDFLNKKIPLIVIKNIGSESKGASPEIILEKIILNVDDDLEDIFDFTTLKTDIKKNINRLLDKLSGEKKDNSGKEKIDHQKVINNLKDLF*
JGI26272J51733_1018759	JGI26272J51733_10187592	F061392	VVVKRLSMICAFFTVGIFLSLQTFAGESDKPDPTFRLNATLYPIDGGQLYIGXVNKDKXTFRXHLRHIGKDGKWVYYYASASAPVNEDGDVEADSAVASIEYPQYIASVIGNTFRKARVRVLFSHRGDGEGFFKEAGQVIFQECATKTFEA
JGI26272J51733_1020572	JGI26272J51733_10205721	F084823	MKENTVRKDDKVTNLSEYKGFQALQKSVGGLATINDEKLAIIAEKMVA
JGI26272J51733_1021183	JGI26272J51733_10211832	F084823	MKQNTLKKDDKVTNLSEYKGFQALQKSVGGLATINDEKLAIIAEKMVA
JGI26272J51733_1021934	JGI26272J51733_10219342	F066842	MNKFETKMLKLINEGSSAGGHGTGLGEIGDGWPDGLYTKRGERRVVGPASLTRGMTQIDFPASDNIYGGNGSLNNLKRAERDKAMVYRYLSGPEEYASIMANELRDDTPPLAPKQRMYGIHGFHRKQEYTIPPETSNFH
JGI26272J51733_1027901	JGI26272J51733_10279012	F051972	MASPIYYFTRSGCAWCTRMQPSIEXINXTLNDEQKIQILNVDDKKSRVIYDTILTSNKLRAITPMLYNSNIGTFLLGYQDKRNVEQFLKANPLKERKPLKPIPTFDIQNSSKKDFDNWKKSVILWYGENQKDLPSNVISQERMIDMVYTQFMAYRTKPLTIEDRLSKLEEQSHEPQNYREECEMMNKELKILKLQIKKLKRLK*
JGI26272J51733_1031521	JGI26272J51733_10315212	F027810	MNNEIQKVGIDAFNDLAKSHDAHVKEVEKLQEELNELNKLKLVDQHGELLLECRIGDENHRLLLEVGLNTILEKILKEGK*
JGI26272J51733_1032675	JGI26272J51733_10326751	F023637	NTTLPYRSRKGRYFSQHHKRNDIVGNKFVHQKDTSINERRFIDEVKGGMINTDEDGLADLNYNIVKREYLFNTEHEIIDFRCEQDIPNHVEI*
JGI26272J51733_1033688	JGI26272J51733_10336881	F003286	MAVQLLDKTIVMKPKRSSMVKVQKDVDFEENYDSESENFYGEPKADRFDEIIDLLKQGNIYGEKEEITLGAVDVPIEKQIAIDKASTKGLKSEEYANNSENKLDKLRKLRRGN*
JGI26272J51733_1035609	JGI26272J51733_10356091	F063751	RMYGIHGFHRKQEYTIPPETSNFHSTSETLIKPTTPPEGTKSGGIDPTPEPGSKEMGSASGYRQVQKGGQSIFAKNEKLWGKWIDHRIGGRVDSREWKGNKLVDLLPKGKK*
JGI26272J51733_1042883	JGI26272J51733_10428832	F035962	MMDKLGLYINNLMTTVVDKEDKFFLRKLAFDELLKLKSDISDFLARYVDEFDGIPDELKEKDT
JGI26272J51733_1045646	JGI26272J51733_10456463	F037260	MSKKKKDVPFHMKHNYKQWTSDQGYTFWAKDEQDAKSYLEKTEGNLGSLKEVEVKDVIYGRNFITLHSLSSC
JGI26272J51733_1050319	JGI26272J51733_10503191	F046020	LFTFSLNAQIDQHFKSKELCWEFYEKHPLLYRQIDEAFPKDYYVRLYNSDEHGLVWITCNKLSDLRGNDITRFPVNVPLPTPK*
JGI26272J51733_1051191	JGI26272J51733_10511911	F015265	FPDFKIKSSAMYPAHITKNPKLIEKNAIVNLNNVGLPVFLNPINDITPMMSPIKNPTRLSIFSNKNSNCI*
JGI26272J51733_1056789	JGI26272J51733_10567891	F033048	MIDKTIKLAGEYPSDFKPSTSIQEIQQHFEAYSFHNGRMIGGSKSGYSSQHPDELIVFNANVLMKDIGKVWHGDLNLTEDYLVLKDIAKSLNT
JGI26272J51733_1057890	JGI26272J51733_10578901	F057436	MTRVNYETLGKLIDIDEKDLEFERVTNSIDVVDREYGVEVIFDYYRRHGFPHYKIRED
JGI26272J51733_1057915	JGI26272J51733_10579152	F043154	TGKYTLTVGLSNAEAKKLEEAGVKVRSYTDKDTGKEIKIRKFSTQYKLEDNMIQTVSGDSIGTDFGSGSDVEVLWKAGNXHPTHGVATYLTAIKVADDHEPGYKGANAEISEFLTA*
JGI26272J51733_1058111	JGI26272J51733_10581111	F100510	NAKWYNKYFAIPFQRIIQAIKDFPSEVKWFYQRGSRGWSDRSAWSIDTWLVDNLIPMLERLKIDNHSTPMSMFKKKDGFDKDGIPTDEANVLAAQRWDNVLNEIIYGLKCAKKLQDMDYNYKDKKLTKRLTKSSQRSFELIGKHLFSLWD*
JGI26272J51733_1064536	JGI26272J51733_10645361	F078263	LKRLEEKIDTSQPIALLKDLHRQDDEIRHFKNVETTMNTVASSVKELDGTIRKLEERTGSKFTEMTSQIKVTEAMVADKHKGLISKINNINSRIDNLEKKIDFAVRELKSETRKTSFLRKLLWLD*
JGI26272J51733_1065927	JGI26272J51733_10659271	F047114	MPTTWSTATTSWSLATYTWSDFSIAYELSLIGEVGGRYKRQDIYADLFKDRTKKKKVIEXIMKVKSNQIKQKVEIPLNTQIALSDIDMVIQEVLNKPMVNINVA*
JGI26272J51733_1070398	JGI26272J51733_10703982	F012582	MTDFHKKLKHLSATMLHWAEENKIRTKRNGNYEIPQRNGIDWKFDFKFVTKLDSMLADGLDXKXXKKEMEMCNQLYEYYGNVYVKF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003600: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_120m_DNA

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences