NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003594

3300003594: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_10m_DNA



Overview

Basic Information
IMG/M Taxon OID3300003594 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046785 | Gp0091331 | Ga0008672
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_10m_DNA
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size136192577
Sequencing Scaffolds13
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC21812
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales1
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011736Metagenome / Metatranscriptome287N
F015265Metagenome / Metatranscriptome256Y
F026122Metagenome / Metatranscriptome199Y
F039110Metagenome / Metatranscriptome164Y
F040645Metagenome / Metatranscriptome161N
F042172Metagenome158Y
F046847Metagenome / Metatranscriptome150N
F058917Metagenome / Metatranscriptome134Y
F059474Metagenome / Metatranscriptome134Y
F060929Metagenome / Metatranscriptome132N
F064738Metagenome / Metatranscriptome128Y
F078263Metagenome / Metatranscriptome116N
F084823Metagenome / Metatranscriptome112N
F105205Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26258J51719_1002008All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC21816241Open in IMG/M
JGI26258J51719_1004467All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales3452Open in IMG/M
JGI26258J51719_1004527All Organisms → Viruses → Predicted Viral3416Open in IMG/M
JGI26258J51719_1007662All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.2318Open in IMG/M
JGI26258J51719_1009645All Organisms → Viruses → Predicted Viral1956Open in IMG/M
JGI26258J51719_1011655All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC21811682Open in IMG/M
JGI26258J51719_1013671All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1476Open in IMG/M
JGI26258J51719_1018219Not Available1174Open in IMG/M
JGI26258J51719_1022349All Organisms → Viruses → Predicted Viral1004Open in IMG/M
JGI26258J51719_1029319All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium818Open in IMG/M
JGI26258J51719_1039016Not Available662Open in IMG/M
JGI26258J51719_1039850All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria651Open in IMG/M
JGI26258J51719_1048103All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua569Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26258J51719_1002008JGI26258J51719_10020083F042172VIKNIGSESKGASPEIILEKIILNVDDDLEDIFDFTTLKTDIKKNINRLLDKLSGEKKDNSGKEKIDHQKVINNLKDLF*
JGI26258J51719_1004467JGI26258J51719_10044674F011736MENKNIFLMIFFYCTINLSYAKDLDXXSKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKKAGNCDFDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
JGI26258J51719_1004527JGI26258J51719_10045273F058917MNKLLKALEKEGTDIRSADMVVGGKLHHVYYRVMSGQDHDNALELSKKVKTVKEADGSTTDLTYYDDGLLRAHIIYFQLLTKDGERVFNNLVKVQWIKDTITYESSSYLSALMGLKSVSDIVEAQQEALKKMNG*
JGI26258J51719_1007662JGI26258J51719_10076625F105205RCKICEIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK*
JGI26258J51719_1009645JGI26258J51719_10096451F046847MPDVDKTETVNTPKTENEVVISQSKLDALIDKGFSKGAKRAKSELTEQLGVDSFEQARELILAKKEADDANKSELEKAAELISTLNSTIEGLETNNQKIQADMAIQKVVSDNGIKDADYFKHLLAQASRSEDFNQDEFITDLKGVKPYLFKGADNQPKKVDATSNR
JGI26258J51719_1011655JGI26258J51719_10116553F060929NVISNEVTDNLSVDIYRDEYVAALKNEIDNAYVDDLRSLADIEYNPQVIQFRN*
JGI26258J51719_1013671JGI26258J51719_10136714F015265VPDFITRSSIMYPDHITKNPKLIEKNAIVNLNNVGLPVFLNPIYAIIPMASPTKKPTRLSIFSNKNSNYV*
JGI26258J51719_1018219JGI26258J51719_10182192F059474MAFKAIDRSETLEVVSTDDPAIDLANSDVSAYIDSHDLKHLSFKAGEEPTTFHLGTITFMKFAEIKDKHISFDLGEAGQEIKTNLFGLTADSLRYSLKKADNLPFPIKVERGRLSDTTMDKLARLGIVEELGNVALSLNGFGDDEEKK*
JGI26258J51719_1022349JGI26258J51719_10223492F084823VKQNTLKKDDKVTNLSEYKGFQALQKSVGGLATINDEKLAIIAEKMW
JGI26258J51719_1029319JGI26258J51719_10293191F040645MKRVGIRSKIILLTLLILGGGFFVAPEILEEVAEVRYRRTLEDGRANLAQRLEKDYKKLNLRNIPRLGDYFVFIYDKQSGKLIREYSFFPPRLIDDYNLAKNQFAINENDLEFIKTESIDKKVSIIVGFSESTSRNAVDGLERFFVLSYLLASIFVVLGILISTEIALRPVSR
JGI26258J51719_1039016JGI26258J51719_10390162F039110EFNVSKAVSKKADAKKTSAKLKLKAIADGSHGIDGGIYTFKKGDTVTVSKKAHYDSMKELACFNEV*
JGI26258J51719_1039850JGI26258J51719_10398502F064738TVSLLKSEFIKDTIKLKKLTITKTNCRNDRDNIFWLICLLVLLKSLIETPQSNTESNNPKIKE*
JGI26258J51719_1048103JGI26258J51719_10481031F078263NALLFLSIFMEVFVMELLHDSDGLEGSLDCQLKRLEEKIETSQPVALMKDLHRIDDEIKHFKDVEITTNTVVSSVKEHDETIKKLEERTRDKFAEMTSQNKATEAMVADKHNDLISKINGISSRVFNI*
JGI26258J51719_1053695JGI26258J51719_10536952F026122VYRNGTQAIVYIGQIVEIPATYDDEGHEITPPVYYDGVFYDLMTTEEFDFGTNEIFPTDCVHSFAGYEKNAEGTDIDSEDLEEI*
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