Basic Information | |
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IMG/M Taxon OID | 3300003591 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0091323 | Ga0008664 |
Sample Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_150m_DNA |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | Y |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 154464305 |
Sequencing Scaffolds | 34 |
Novel Protein Genes | 41 |
Associated Families | 35 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Eukaryota | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae | 1 |
Not Available | 17 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
All Organisms → Viruses → Predicted Viral | 4 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter | 1 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae | 1 |
All Organisms → cellular organisms → Archaea | 2 |
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Marinimicrobia bacterium SCGC AAA003-L08 | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → coastal inlet → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002125 | Metagenome / Metatranscriptome | 591 | Y |
F004316 | Metagenome / Metatranscriptome | 443 | Y |
F011256 | Metagenome / Metatranscriptome | 293 | N |
F011736 | Metagenome / Metatranscriptome | 287 | N |
F015024 | Metagenome / Metatranscriptome | 258 | N |
F015265 | Metagenome / Metatranscriptome | 256 | Y |
F015441 | Metagenome / Metatranscriptome | 254 | Y |
F016055 | Metagenome / Metatranscriptome | 250 | Y |
F017732 | Metagenome / Metatranscriptome | 239 | N |
F031720 | Metagenome | 182 | N |
F035724 | Metagenome | 171 | Y |
F042010 | Metagenome / Metatranscriptome | 159 | N |
F043154 | Metagenome / Metatranscriptome | 157 | Y |
F046847 | Metagenome / Metatranscriptome | 150 | N |
F052275 | Metagenome / Metatranscriptome | 143 | Y |
F055778 | Metagenome / Metatranscriptome | 138 | Y |
F059054 | Metagenome / Metatranscriptome | 134 | Y |
F059474 | Metagenome / Metatranscriptome | 134 | Y |
F061392 | Metagenome / Metatranscriptome | 132 | N |
F061863 | Metagenome / Metatranscriptome | 131 | Y |
F063080 | Metagenome / Metatranscriptome | 130 | N |
F063162 | Metagenome / Metatranscriptome | 130 | Y |
F063593 | Metagenome | 129 | Y |
F066454 | Metagenome / Metatranscriptome | 126 | N |
F071249 | Metagenome | 122 | Y |
F071971 | Metagenome | 121 | N |
F074168 | Metagenome / Metatranscriptome | 120 | Y |
F074447 | Metagenome / Metatranscriptome | 119 | N |
F080905 | Metagenome | 114 | N |
F091216 | Metagenome | 107 | Y |
F096496 | Metagenome | 104 | N |
F096688 | Metagenome / Metatranscriptome | 104 | N |
F101330 | Metagenome / Metatranscriptome | 102 | N |
F102126 | Metagenome / Metatranscriptome | 102 | N |
F106105 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
JGI26250J51715_1000283 | All Organisms → cellular organisms → Eukaryota | 17286 | Open in IMG/M |
JGI26250J51715_1000355 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae | 14812 | Open in IMG/M |
JGI26250J51715_1000435 | Not Available | 13079 | Open in IMG/M |
JGI26250J51715_1000815 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 8857 | Open in IMG/M |
JGI26250J51715_1003044 | Not Available | 3955 | Open in IMG/M |
JGI26250J51715_1003257 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3819 | Open in IMG/M |
JGI26250J51715_1003795 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3480 | Open in IMG/M |
JGI26250J51715_1005216 | Not Available | 2869 | Open in IMG/M |
JGI26250J51715_1006432 | Not Available | 2519 | Open in IMG/M |
JGI26250J51715_1006970 | All Organisms → Viruses → Predicted Viral | 2392 | Open in IMG/M |
JGI26250J51715_1008461 | All Organisms → Viruses → Predicted Viral | 2108 | Open in IMG/M |
JGI26250J51715_1011171 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter | 1764 | Open in IMG/M |
JGI26250J51715_1012192 | All Organisms → Viruses → Predicted Viral | 1661 | Open in IMG/M |
JGI26250J51715_1014605 | Not Available | 1467 | Open in IMG/M |
JGI26250J51715_1018974 | All Organisms → Viruses → Predicted Viral | 1227 | Open in IMG/M |
JGI26250J51715_1022384 | All Organisms → cellular organisms → Bacteria | 1095 | Open in IMG/M |
JGI26250J51715_1025197 | Not Available | 1013 | Open in IMG/M |
JGI26250J51715_1033822 | Not Available | 830 | Open in IMG/M |
JGI26250J51715_1037011 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae | 781 | Open in IMG/M |
JGI26250J51715_1047886 | Not Available | 659 | Open in IMG/M |
JGI26250J51715_1051835 | Not Available | 625 | Open in IMG/M |
JGI26250J51715_1052836 | Not Available | 618 | Open in IMG/M |
JGI26250J51715_1054967 | All Organisms → cellular organisms → Archaea | 602 | Open in IMG/M |
JGI26250J51715_1060376 | Not Available | 567 | Open in IMG/M |
JGI26250J51715_1060653 | Not Available | 565 | Open in IMG/M |
JGI26250J51715_1061731 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Marinimicrobia bacterium SCGC AAA003-L08 | 559 | Open in IMG/M |
JGI26250J51715_1063237 | Not Available | 550 | Open in IMG/M |
JGI26250J51715_1065601 | Not Available | 537 | Open in IMG/M |
JGI26250J51715_1066284 | Not Available | 534 | Open in IMG/M |
JGI26250J51715_1066362 | Not Available | 533 | Open in IMG/M |
JGI26250J51715_1067954 | All Organisms → cellular organisms → Archaea | 525 | Open in IMG/M |
JGI26250J51715_1070438 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster | 513 | Open in IMG/M |
JGI26250J51715_1071455 | Not Available | 509 | Open in IMG/M |
JGI26250J51715_1071817 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales | 507 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
JGI26250J51715_1000025 | JGI26250J51715_100002555 | F017732 | MHQFILNVIFLFLLTGCASKGYSIDEIFEDGAEIDSTPEDSIKYTCNQNKYFYIQYIGDEKKSLWIIFPKNEIKLYQTEISNVFSNGITKLIFNEQTTTVKKDGSIFYXECXKQT* |
JGI26250J51715_1000283 | JGI26250J51715_100028318 | F074168 | MNKRAAAVRCVFCNSLSHHMDNCNSTFNGRRKSLDNGWCFLMDGDRPIFETLAANELRYIAYHYAAYEGAIHDWREKNTQQYNRKFKFRPVDLSLSKAQLIKELARRWDGFQPVRDLYQNKPEPTEEDDCPICLDCTTTSYKWMYTVSNWDKCSDKVTTECKHSFCKTCWTSHTEKNRRYDYSATGNHHSGGNVCVNCPMCRHKIAVN* |
JGI26250J51715_1000355 | JGI26250J51715_10003558 | F011256 | MSLENIFGAVVLLGIGLVILLHPDKFRYSSKQIKQFIFRYWWISVFVLLGYLTMSEWSNLFIPTD* |
JGI26250J51715_1000435 | JGI26250J51715_10004351 | F015441 | MIASFLNYIFGYNKTNTNANASNNNIQIDKMYKKLPYELKNIIFEYDGRIKYKYKNKNSIDYHKFVNVIHKHDERYNIITPIIVKKQIIMKXTETRPNDTSFYFEFAFDKQPNLXLCYDYNYNFNNQFEICYTDMKGSGHIFGSDQIRTVYS* |
JGI26250J51715_1000815 | JGI26250J51715_10008157 | F011736 | MENKNIFLMIFFYCTINLSYAKDLDTSSKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKKAGNCDFDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL* |
JGI26250J51715_1003044 | JGI26250J51715_10030443 | F015441 | MEAVDTIGLQYKSIKLPYELINIILEYDGRIKYKYKQPNSIDYHKYVNIIHKNDSRYETIKPVIVKKIYIMKYELTTSPNDSSFYFQFTFDNQPMVVLCYDYNSYNNQFEICYTDMKGSGHVLGSDQTRHICI* |
JGI26250J51715_1003257 | JGI26250J51715_10032576 | F011736 | SKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKKAGNCDFDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL* |
JGI26250J51715_1003795 | JGI26250J51715_10037951 | F011736 | NSKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKKAGNCDXDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL* |
JGI26250J51715_1005216 | JGI26250J51715_10052161 | F063593 | MSHDLELRTDGTAKFAYSNREIPWHRLGXPMSGLQTAEAMLEAAEADYDVILAKVAAVDDDGNWILNPDGSKIIVEDSRATLRQNNDGSFNGLATVGTRYVVQQNRDCIQYALD |
JGI26250J51715_1006197 | JGI26250J51715_10061971 | F091216 | SQHNTSHDNVGDDRNQVWGGSIANINADGTFTHVVVEEDDY* |
JGI26250J51715_1006432 | JGI26250J51715_10064321 | F042010 | VKRCGKSTGSIGNNERWKTPLGARLSRDDIVEKLKAILG* |
JGI26250J51715_1006970 | JGI26250J51715_10069704 | F059474 | MAFKAIDRSETIKVVSTDDPAIDLANSDIAAYIDSHDMNHLSFIDGEQPTTFHLGTITFMKFAEIKDKHISFDIGEAGQEIKTNLFGLTADSLRYSLKKADNLPFPIKVERGRLSDTTMDKLARLGIVEELGNVALSLNGFGDDEEKK* |
JGI26250J51715_1008461 | JGI26250J51715_10084612 | F102126 | MGKKGKDIQRGQDAKRLVEDPLYKEAFEDTKNHLIEMLLQTKISEETERDRIYITIKSLGLVDEHIRSVLTTGKLAEGQTERILLIQIKNKGDNYGFCRE* |
JGI26250J51715_1011171 | JGI26250J51715_10111711 | F002125 | FQTYLLRTAVIALVGEASLTSVDLFVSKDTANLMFLRKPQQPIIEVQKVNK* |
JGI26250J51715_1012192 | JGI26250J51715_10121924 | F046847 | MADEQITEQVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELAXXLGVDSIEQARELINAKRETDEANKSDLDKAAELIQTLNSTIDGLESNNKMMVADMAVQKVVTENGIKDADYFKH |
JGI26250J51715_1014149 | JGI26250J51715_10141492 | F063162 | MKSLKIKGYLTWNDIMKNKKITDIQDPIIDMEINKSDFENIYKEIVCELQGSDEYFESYIDYYFTINPIKTYVLSFKGEKEKIAFYNIGLKNKSVLSLTEIQEGEETKDKNKRKEI* |
JGI26250J51715_1014605 | JGI26250J51715_10146052 | F015441 | MNTLQYKLVKLPYELVNIIFDYDGRIKYKYKSKNAIDYHKNVNVIHKHDTRYSIITPIIDKKMKIMKDTNISPXDTSFYFEFAFDNKPNVMLCYDYNYYFTNQFEICYADMGDTDRCFGHVLGCDQIRTVYK* |
JGI26250J51715_1017176 | JGI26250J51715_10171761 | F031720 | EGIYPIKCNLNFSGLPAMSLCLDHREQRLKSSASKNPQFTLIIDSNTTWNLLKEQTIPSDKIEGDSELALMFLIILAESNIDLELLIYKNFGTVPGLIIRKILSQDFLNDNQKAENIRVRSLQTSLRNISIRMDRMEQKQAL* |
JGI26250J51715_1018974 | JGI26250J51715_10189743 | F066454 | MSIRLDVLILINSGVTDRSEIMERLGINIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVSRSELINLWNELTDYYLPYEGDKEFTEIVVFPP* |
JGI26250J51715_1022384 | JGI26250J51715_10223841 | F052275 | SKYKCHACGYSAQVWNAPDKAPIATVDTRHCLGCKSLVEVPIEFHGAGLIGDPDVVPSFLNRCPDCNSSNVQPWNVRHGCPKCGEHMTEAAQV* |
JGI26250J51715_1025197 | JGI26250J51715_10251971 | F035724 | PESPYEREVIKHNSSVQMEDGSFFVYSRSVTNYRYTISVVLTSETERDALESFYDSTVNGMEKTFSYTDPYSDSYTVRFENELHISEIFKDRMYRATFNLIQTA* |
JGI26250J51715_1033822 | JGI26250J51715_10338221 | F061863 | MQINTNLLIQTFIAACLVIFGVVTKNSFEQLGFPNHPIGKPIGMGMFIMGWIYTAYILSINKPNKLMFILPSALIVMSVMMMKQYMVKKQXPPMVFPXIFAXSWIILGLGAGNHLVGNQKYLGLFASFLVLLSMMVILPFQRKNKIIDGPGQPLFVIAWGILIMLNSNR* |
JGI26250J51715_1037011 | JGI26250J51715_10370111 | F015265 | MLPDFITKSSNMYPDHMTKNPTLIARNAIVNLNNVGLPVFLNPMYDIIPMASPTKKPIRLSIFSNKNSNGV* |
JGI26250J51715_1037206 | JGI26250J51715_10372062 | F063162 | MKDYTLKGYSTWNDIMNISQITDIQDPVLEMEVDKYEFEDMYSDIVCELQGNDDVLESYIDYYFTVNPMKSYVLSFRSQKEKDEFYDIGLDKECVASLTEVCEGETEQEKKKRKKNEKDDYIVFE* |
JGI26250J51715_1044636 | JGI26250J51715_10446361 | F004316 | GGADEDQIKTISQVAAKGEVRVPSAVRGEVRVPSAARGEVRVPQDCKTLLEAVQRVAQDSRFTTIVVGQGEHQIDDDYLYIRSVMNIAGDPDVAKEDIVIVGGIHFKQGIQGCHLQHLTLRKAEYHGVWGYSSFTMDDVIVEQCNHHGVVVYGYVVARCTNVEVRQCGQSGVCADMGASITLIGDKTTVHHNCTDGDSDKYGLKVYGFSSTIQLVYPLTKEQVSINNGG |
JGI26250J51715_1047246 | JGI26250J51715_10472461 | F074447 | KESISSKLPEYSYKTIAQIIDEGLEKGFFIKMPARVQKKHDLKIRNIRPSEDLTVEFINSNINMISSFMKFLGKHK* |
JGI26250J51715_1047886 | JGI26250J51715_10478861 | F043154 | MITKGVAKFVYLDSTEKYNNEDTGKYTLTVGLSNAEAKKLEEAGVKVRSYTDKDTGKEIKIRKFSTQYKLEDNMIQTVSGDSIGTDFGSGSDVEVLWKAGNAHPTHGVATYLTAIKVADDHEPGYK |
JGI26250J51715_1051835 | JGI26250J51715_10518351 | F071249 | MVNYVLMFNNYVNTLQDMATDVEYDEVVVNLKVLASVSVNSKLYTRGSLLNIEQSSIIPEGIRRWYRNDNRDESLKKIDRIITKSMLYTKNYPQVLQYLKESKIGLLNMKDTYSLCIQTVARLDTIIAKIDVCIKD* |
JGI26250J51715_1052836 | JGI26250J51715_10528361 | F055778 | IMLSSVDFPEPELPTIKTISPCSIESDTSSRAFTWLSPSP* |
JGI26250J51715_1054967 | JGI26250J51715_10549671 | F096496 | KSEKVDPKILNNIRRTLEKKLDGLTEDLDIIKNSKSLENWRLLQSEKFQELHKVLESTVMNFKPFYPFAVKTFSKKVGTKKFRMFWMDLSEESNFSTERIFEPSFALRKIKHYFNDDSFELLCWAVENNLIPCYKNNAKREEDFELAKNDELYFLKLQNTRTFTNEKKVQLKPEIEKERLENNMMWNYINKQYDMLNKKL |
JGI26250J51715_1060376 | JGI26250J51715_10603761 | F106105 | MGALPYDXKHENEKVLVDCDVCSKRFLLYQDRVPTCTNCLTDKTIKKNRNRQGTPIAFLFTED* |
JGI26250J51715_1060653 | JGI26250J51715_10606531 | F061863 | IYIYIIIMKIDTNLLIQTSIASCLVIFGVVTKNSSEQLGFPNHPIGKPLGMGMFIMGWIYTAYIFSINKPNKLAFILPSIGIVIAVMMMKQYMVKKQTPPMVFPVIFALSWIILGLNAGNHLSGNQKYLGLFASFLVLLSMMQILPYQRTHNIVDGPGQPLFVIAWGILIMLNSNR* |
JGI26250J51715_1061731 | JGI26250J51715_10617311 | F101330 | MWLQNNYTVSFCGFIGLCIGYFTGHQEICIMIGVGIGILIRIV |
JGI26250J51715_1063237 | JGI26250J51715_10632371 | F096688 | GLAVVGCASIMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYNVAWNKWRWQKIWSRAIEIISARTLQLLG* |
JGI26250J51715_1065601 | JGI26250J51715_10656012 | F059054 | VLEFLSLESNKNKEPIIGSSIKDDKIGKFINSKLKMLIMQKTLIIS* |
JGI26250J51715_1066284 | JGI26250J51715_10662841 | F063080 | PIIPIIIAAILRALIISPKKIVAPIVIKIGFEKLIAVAWASGIRVKQVKPASIPIAPKKPLIKNNFVLFIFIAARPVECNIGSITIKAKRFLKKTTSRMCKFSDAFLIKITIIEKQTIDKIFKMIALVCEFCNLKNRIILTIMVSFPPMHS* |
JGI26250J51715_1066362 | JGI26250J51715_10663622 | F016055 | MEEELHIERHGSSRKSKRFANKRERLQVKNYLKGKSSEDFVDETDDEDIEYEEI |
JGI26250J51715_1067954 | JGI26250J51715_10679541 | F071971 | MTVFYNAESTINAINNTAKYGLENLNNVHAAVSIGFIVTQTDNPNINXPDAIAVHKYTSPTMFSPLSVVMKNGAIENNTITT |
JGI26250J51715_1070438 | JGI26250J51715_10704381 | F015024 | TEYYELFKQYPEWEVEHENHKEGFNGKRNFELEKAITKLVAEDETLFLYQERTFNFSMLLLNKQYADLDFWVCTTHALHDISEHKQGLLDDGDYRLYFEGAEGPIEEEEEQGYLCDLPLNVRNGHFNIEEFEQILDEIMTFEGAIEDTYYIEELIDNGRAYTEDGETFKV |
JGI26250J51715_1071455 | JGI26250J51715_10714551 | F080905 | IKESFASDLPDKKMFTTTVMSGANRSTHHDLQIELDGALKTVEFKGSMSFKPIDTTKPPWNNGVQFYNGPGNKFKAGSLYAKKFYDECLDKIIIDLELKTPKPSYEDWAKDAFRQSKPKSPFVCELREKGYCSNYLSDARKQFNKSFMLSTFELNDLMIEVQKISEEVL |
JGI26250J51715_1071817 | JGI26250J51715_10718171 | F061392 | TFASELDTPDPAFKLAATLFPIDGGRLYVGSVDRDKKTFRLHLRHIGKDSKWVYYYANASAFVDEDGDIEPDSAVASIEYPHYTASVIGNTFRRARIRVLFSSRGDGKGFFKGAGHVIFQECSTKAFEAKDWSCTGWEYLGTLPGFQ* |
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