NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300003591

3300003591: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_150m_DNA



Overview

Basic Information
IMG/M Taxon OID3300003591 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046785 | Gp0091323 | Ga0008664
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_150m_DNA
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size154464305
Sequencing Scaffolds34
Novel Protein Genes41
Associated Families35

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae1
Not Available17
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → Viruses → Predicted Viral4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae1
All Organisms → cellular organisms → Archaea2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Marinimicrobia bacterium SCGC AAA003-L081
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal inletsea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002125Metagenome / Metatranscriptome591Y
F004316Metagenome / Metatranscriptome443Y
F011256Metagenome / Metatranscriptome293N
F011736Metagenome / Metatranscriptome287N
F015024Metagenome / Metatranscriptome258N
F015265Metagenome / Metatranscriptome256Y
F015441Metagenome / Metatranscriptome254Y
F016055Metagenome / Metatranscriptome250Y
F017732Metagenome / Metatranscriptome239N
F031720Metagenome182N
F035724Metagenome171Y
F042010Metagenome / Metatranscriptome159N
F043154Metagenome / Metatranscriptome157Y
F046847Metagenome / Metatranscriptome150N
F052275Metagenome / Metatranscriptome143Y
F055778Metagenome / Metatranscriptome138Y
F059054Metagenome / Metatranscriptome134Y
F059474Metagenome / Metatranscriptome134Y
F061392Metagenome / Metatranscriptome132N
F061863Metagenome / Metatranscriptome131Y
F063080Metagenome / Metatranscriptome130N
F063162Metagenome / Metatranscriptome130Y
F063593Metagenome129Y
F066454Metagenome / Metatranscriptome126N
F071249Metagenome122Y
F071971Metagenome121N
F074168Metagenome / Metatranscriptome120Y
F074447Metagenome / Metatranscriptome119N
F080905Metagenome114N
F091216Metagenome107Y
F096496Metagenome104N
F096688Metagenome / Metatranscriptome104N
F101330Metagenome / Metatranscriptome102N
F102126Metagenome / Metatranscriptome102N
F106105Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26250J51715_1000283All Organisms → cellular organisms → Eukaryota17286Open in IMG/M
JGI26250J51715_1000355All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae14812Open in IMG/M
JGI26250J51715_1000435Not Available13079Open in IMG/M
JGI26250J51715_1000815All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria8857Open in IMG/M
JGI26250J51715_1003044Not Available3955Open in IMG/M
JGI26250J51715_1003257All Organisms → cellular organisms → Bacteria → Proteobacteria3819Open in IMG/M
JGI26250J51715_1003795All Organisms → cellular organisms → Bacteria → Proteobacteria3480Open in IMG/M
JGI26250J51715_1005216Not Available2869Open in IMG/M
JGI26250J51715_1006432Not Available2519Open in IMG/M
JGI26250J51715_1006970All Organisms → Viruses → Predicted Viral2392Open in IMG/M
JGI26250J51715_1008461All Organisms → Viruses → Predicted Viral2108Open in IMG/M
JGI26250J51715_1011171All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1764Open in IMG/M
JGI26250J51715_1012192All Organisms → Viruses → Predicted Viral1661Open in IMG/M
JGI26250J51715_1014605Not Available1467Open in IMG/M
JGI26250J51715_1018974All Organisms → Viruses → Predicted Viral1227Open in IMG/M
JGI26250J51715_1022384All Organisms → cellular organisms → Bacteria1095Open in IMG/M
JGI26250J51715_1025197Not Available1013Open in IMG/M
JGI26250J51715_1033822Not Available830Open in IMG/M
JGI26250J51715_1037011All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae781Open in IMG/M
JGI26250J51715_1047886Not Available659Open in IMG/M
JGI26250J51715_1051835Not Available625Open in IMG/M
JGI26250J51715_1052836Not Available618Open in IMG/M
JGI26250J51715_1054967All Organisms → cellular organisms → Archaea602Open in IMG/M
JGI26250J51715_1060376Not Available567Open in IMG/M
JGI26250J51715_1060653Not Available565Open in IMG/M
JGI26250J51715_1061731All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Marinimicrobia bacterium SCGC AAA003-L08559Open in IMG/M
JGI26250J51715_1063237Not Available550Open in IMG/M
JGI26250J51715_1065601Not Available537Open in IMG/M
JGI26250J51715_1066284Not Available534Open in IMG/M
JGI26250J51715_1066362Not Available533Open in IMG/M
JGI26250J51715_1067954All Organisms → cellular organisms → Archaea525Open in IMG/M
JGI26250J51715_1070438All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster513Open in IMG/M
JGI26250J51715_1071455Not Available509Open in IMG/M
JGI26250J51715_1071817All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26250J51715_1000025JGI26250J51715_100002555F017732MHQFILNVIFLFLLTGCASKGYSIDEIFEDGAEIDSTPEDSIKYTCNQNKYFYIQYIGDEKKSLWIIFPKNEIKLYQTEISNVFSNGITKLIFNEQTTTVKKDGSIFYXECXKQT*
JGI26250J51715_1000283JGI26250J51715_100028318F074168MNKRAAAVRCVFCNSLSHHMDNCNSTFNGRRKSLDNGWCFLMDGDRPIFETLAANELRYIAYHYAAYEGAIHDWREKNTQQYNRKFKFRPVDLSLSKAQLIKELARRWDGFQPVRDLYQNKPEPTEEDDCPICLDCTTTSYKWMYTVSNWDKCSDKVTTECKHSFCKTCWTSHTEKNRRYDYSATGNHHSGGNVCVNCPMCRHKIAVN*
JGI26250J51715_1000355JGI26250J51715_10003558F011256MSLENIFGAVVLLGIGLVILLHPDKFRYSSKQIKQFIFRYWWISVFVLLGYLTMSEWSNLFIPTD*
JGI26250J51715_1000435JGI26250J51715_10004351F015441MIASFLNYIFGYNKTNTNANASNNNIQIDKMYKKLPYELKNIIFEYDGRIKYKYKNKNSIDYHKFVNVIHKHDERYNIITPIIVKKQIIMKXTETRPNDTSFYFEFAFDKQPNLXLCYDYNYNFNNQFEICYTDMKGSGHIFGSDQIRTVYS*
JGI26250J51715_1000815JGI26250J51715_10008157F011736MENKNIFLMIFFYCTINLSYAKDLDTSSKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKKAGNCDFDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
JGI26250J51715_1003044JGI26250J51715_10030443F015441MEAVDTIGLQYKSIKLPYELINIILEYDGRIKYKYKQPNSIDYHKYVNIIHKNDSRYETIKPVIVKKIYIMKYELTTSPNDSSFYFQFTFDNQPMVVLCYDYNSYNNQFEICYTDMKGSGHVLGSDQTRHICI*
JGI26250J51715_1003257JGI26250J51715_10032576F011736SKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKKAGNCDFDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
JGI26250J51715_1003795JGI26250J51715_10037951F011736NSKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKKAGNCDXDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
JGI26250J51715_1005216JGI26250J51715_10052161F063593MSHDLELRTDGTAKFAYSNREIPWHRLGXPMSGLQTAEAMLEAAEADYDVILAKVAAVDDDGNWILNPDGSKIIVEDSRATLRQNNDGSFNGLATVGTRYVVQQNRDCIQYALD
JGI26250J51715_1006197JGI26250J51715_10061971F091216SQHNTSHDNVGDDRNQVWGGSIANINADGTFTHVVVEEDDY*
JGI26250J51715_1006432JGI26250J51715_10064321F042010VKRCGKSTGSIGNNERWKTPLGARLSRDDIVEKLKAILG*
JGI26250J51715_1006970JGI26250J51715_10069704F059474MAFKAIDRSETIKVVSTDDPAIDLANSDIAAYIDSHDMNHLSFIDGEQPTTFHLGTITFMKFAEIKDKHISFDIGEAGQEIKTNLFGLTADSLRYSLKKADNLPFPIKVERGRLSDTTMDKLARLGIVEELGNVALSLNGFGDDEEKK*
JGI26250J51715_1008461JGI26250J51715_10084612F102126MGKKGKDIQRGQDAKRLVEDPLYKEAFEDTKNHLIEMLLQTKISEETERDRIYITIKSLGLVDEHIRSVLTTGKLAEGQTERILLIQIKNKGDNYGFCRE*
JGI26250J51715_1011171JGI26250J51715_10111711F002125FQTYLLRTAVIALVGEASLTSVDLFVSKDTANLMFLRKPQQPIIEVQKVNK*
JGI26250J51715_1012192JGI26250J51715_10121924F046847MADEQITEQVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELAXXLGVDSIEQARELINAKRETDEANKSDLDKAAELIQTLNSTIDGLESNNKMMVADMAVQKVVTENGIKDADYFKH
JGI26250J51715_1014149JGI26250J51715_10141492F063162MKSLKIKGYLTWNDIMKNKKITDIQDPIIDMEINKSDFENIYKEIVCELQGSDEYFESYIDYYFTINPIKTYVLSFKGEKEKIAFYNIGLKNKSVLSLTEIQEGEETKDKNKRKEI*
JGI26250J51715_1014605JGI26250J51715_10146052F015441MNTLQYKLVKLPYELVNIIFDYDGRIKYKYKSKNAIDYHKNVNVIHKHDTRYSIITPIIDKKMKIMKDTNISPXDTSFYFEFAFDNKPNVMLCYDYNYYFTNQFEICYADMGDTDRCFGHVLGCDQIRTVYK*
JGI26250J51715_1017176JGI26250J51715_10171761F031720EGIYPIKCNLNFSGLPAMSLCLDHREQRLKSSASKNPQFTLIIDSNTTWNLLKEQTIPSDKIEGDSELALMFLIILAESNIDLELLIYKNFGTVPGLIIRKILSQDFLNDNQKAENIRVRSLQTSLRNISIRMDRMEQKQAL*
JGI26250J51715_1018974JGI26250J51715_10189743F066454MSIRLDVLILINSGVTDRSEIMERLGINIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVSRSELINLWNELTDYYLPYEGDKEFTEIVVFPP*
JGI26250J51715_1022384JGI26250J51715_10223841F052275SKYKCHACGYSAQVWNAPDKAPIATVDTRHCLGCKSLVEVPIEFHGAGLIGDPDVVPSFLNRCPDCNSSNVQPWNVRHGCPKCGEHMTEAAQV*
JGI26250J51715_1025197JGI26250J51715_10251971F035724PESPYEREVIKHNSSVQMEDGSFFVYSRSVTNYRYTISVVLTSETERDALESFYDSTVNGMEKTFSYTDPYSDSYTVRFENELHISEIFKDRMYRATFNLIQTA*
JGI26250J51715_1033822JGI26250J51715_10338221F061863MQINTNLLIQTFIAACLVIFGVVTKNSFEQLGFPNHPIGKPIGMGMFIMGWIYTAYILSINKPNKLMFILPSALIVMSVMMMKQYMVKKQXPPMVFPXIFAXSWIILGLGAGNHLVGNQKYLGLFASFLVLLSMMVILPFQRKNKIIDGPGQPLFVIAWGILIMLNSNR*
JGI26250J51715_1037011JGI26250J51715_10370111F015265MLPDFITKSSNMYPDHMTKNPTLIARNAIVNLNNVGLPVFLNPMYDIIPMASPTKKPIRLSIFSNKNSNGV*
JGI26250J51715_1037206JGI26250J51715_10372062F063162MKDYTLKGYSTWNDIMNISQITDIQDPVLEMEVDKYEFEDMYSDIVCELQGNDDVLESYIDYYFTVNPMKSYVLSFRSQKEKDEFYDIGLDKECVASLTEVCEGETEQEKKKRKKNEKDDYIVFE*
JGI26250J51715_1044636JGI26250J51715_10446361F004316GGADEDQIKTISQVAAKGEVRVPSAVRGEVRVPSAARGEVRVPQDCKTLLEAVQRVAQDSRFTTIVVGQGEHQIDDDYLYIRSVMNIAGDPDVAKEDIVIVGGIHFKQGIQGCHLQHLTLRKAEYHGVWGYSSFTMDDVIVEQCNHHGVVVYGYVVARCTNVEVRQCGQSGVCADMGASITLIGDKTTVHHNCTDGDSDKYGLKVYGFSSTIQLVYPLTKEQVSINNGG
JGI26250J51715_1047246JGI26250J51715_10472461F074447KESISSKLPEYSYKTIAQIIDEGLEKGFFIKMPARVQKKHDLKIRNIRPSEDLTVEFINSNINMISSFMKFLGKHK*
JGI26250J51715_1047886JGI26250J51715_10478861F043154MITKGVAKFVYLDSTEKYNNEDTGKYTLTVGLSNAEAKKLEEAGVKVRSYTDKDTGKEIKIRKFSTQYKLEDNMIQTVSGDSIGTDFGSGSDVEVLWKAGNAHPTHGVATYLTAIKVADDHEPGYK
JGI26250J51715_1051835JGI26250J51715_10518351F071249MVNYVLMFNNYVNTLQDMATDVEYDEVVVNLKVLASVSVNSKLYTRGSLLNIEQSSIIPEGIRRWYRNDNRDESLKKIDRIITKSMLYTKNYPQVLQYLKESKIGLLNMKDTYSLCIQTVARLDTIIAKIDVCIKD*
JGI26250J51715_1052836JGI26250J51715_10528361F055778IMLSSVDFPEPELPTIKTISPCSIESDTSSRAFTWLSPSP*
JGI26250J51715_1054967JGI26250J51715_10549671F096496KSEKVDPKILNNIRRTLEKKLDGLTEDLDIIKNSKSLENWRLLQSEKFQELHKVLESTVMNFKPFYPFAVKTFSKKVGTKKFRMFWMDLSEESNFSTERIFEPSFALRKIKHYFNDDSFELLCWAVENNLIPCYKNNAKREEDFELAKNDELYFLKLQNTRTFTNEKKVQLKPEIEKERLENNMMWNYINKQYDMLNKKL
JGI26250J51715_1060376JGI26250J51715_10603761F106105MGALPYDXKHENEKVLVDCDVCSKRFLLYQDRVPTCTNCLTDKTIKKNRNRQGTPIAFLFTED*
JGI26250J51715_1060653JGI26250J51715_10606531F061863IYIYIIIMKIDTNLLIQTSIASCLVIFGVVTKNSSEQLGFPNHPIGKPLGMGMFIMGWIYTAYIFSINKPNKLAFILPSIGIVIAVMMMKQYMVKKQTPPMVFPVIFALSWIILGLNAGNHLSGNQKYLGLFASFLVLLSMMQILPYQRTHNIVDGPGQPLFVIAWGILIMLNSNR*
JGI26250J51715_1061731JGI26250J51715_10617311F101330MWLQNNYTVSFCGFIGLCIGYFTGHQEICIMIGVGIGILIRIV
JGI26250J51715_1063237JGI26250J51715_10632371F096688GLAVVGCASIMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYNVAWNKWRWQKIWSRAIEIISARTLQLLG*
JGI26250J51715_1065601JGI26250J51715_10656012F059054VLEFLSLESNKNKEPIIGSSIKDDKIGKFINSKLKMLIMQKTLIIS*
JGI26250J51715_1066284JGI26250J51715_10662841F063080PIIPIIIAAILRALIISPKKIVAPIVIKIGFEKLIAVAWASGIRVKQVKPASIPIAPKKPLIKNNFVLFIFIAARPVECNIGSITIKAKRFLKKTTSRMCKFSDAFLIKITIIEKQTIDKIFKMIALVCEFCNLKNRIILTIMVSFPPMHS*
JGI26250J51715_1066362JGI26250J51715_10663622F016055MEEELHIERHGSSRKSKRFANKRERLQVKNYLKGKSSEDFVDETDDEDIEYEEI
JGI26250J51715_1067954JGI26250J51715_10679541F071971MTVFYNAESTINAINNTAKYGLENLNNVHAAVSIGFIVTQTDNPNINXPDAIAVHKYTSPTMFSPLSVVMKNGAIENNTITT
JGI26250J51715_1070438JGI26250J51715_10704381F015024TEYYELFKQYPEWEVEHENHKEGFNGKRNFELEKAITKLVAEDETLFLYQERTFNFSMLLLNKQYADLDFWVCTTHALHDISEHKQGLLDDGDYRLYFEGAEGPIEEEEEQGYLCDLPLNVRNGHFNIEEFEQILDEIMTFEGAIEDTYYIEELIDNGRAYTEDGETFKV
JGI26250J51715_1071455JGI26250J51715_10714551F080905IKESFASDLPDKKMFTTTVMSGANRSTHHDLQIELDGALKTVEFKGSMSFKPIDTTKPPWNNGVQFYNGPGNKFKAGSLYAKKFYDECLDKIIIDLELKTPKPSYEDWAKDAFRQSKPKSPFVCELREKGYCSNYLSDARKQFNKSFMLSTFELNDLMIEVQKISEEVL
JGI26250J51715_1071817JGI26250J51715_10718171F061392TFASELDTPDPAFKLAATLFPIDGGRLYVGSVDRDKKTFRLHLRHIGKDSKWVYYYANASAFVDEDGDIEPDSAVASIEYPHYTASVIGNTFRRARIRVLFSSRGDGKGFFKGAGHVIFQECSTKAFEAKDWSCTGWEYLGTLPGFQ*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.