| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003342 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053054 | Gp0055717 | Ga0005092 |
| Sample Name | Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D3 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 72342658 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Rifle, Colorado, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → land → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Rifle, Colorado, United States | |||||||
| Coordinates | Lat. (o) | 39.534762 | Long. (o) | -107.782602 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025922 | Metagenome / Metatranscriptome | 199 | Y |
| F050966 | Metagenome / Metatranscriptome | 144 | Y |
| F100657 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C687J50190_1004764 | Not Available | 2002 | Open in IMG/M |
| C687J50190_1005826 | Not Available | 1757 | Open in IMG/M |
| C687J50190_1011460 | Not Available | 1075 | Open in IMG/M |
| C687J50190_1020470 | Not Available | 699 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C687J50190_1004764 | C687J50190_10047641 | F050966 | MSGSMWQGMKTRHGDGTEALSEEMESNGSATPKSRRHPLTLP |
| C687J50190_1005826 | C687J50190_10058265 | F100657 | FKSDTYNSIIYLTYCFNSCILIYMIYFINSHKEIMIMTQITISYTTSVSTPAGWRNETVTATVEVISPKRGRVLCVQDIGGNGNSGYGSRTGAKRQAYHVGGIAMREQGKIKNLSACCIL |
| C687J50190_1011460 | C687J50190_10114602 | F025922 | MARNRIIYASQSVWCNGEVLYRVQSLGSTTTFTSEDIFELGHLDIIDVVDDVPAVAVTLNTNDFGDVKTLATLAQVSPAKAAMSATATSTNGNLVVVSGTQLAETSTYLHGVSLADFSIVCGNLPGVTIWAPVQDECSIGTLANNIDQTLFMDEVYVNSLEFSYTTGANATENYGAETDNKMWLLNAGRFVNMDTFTFTTGSETSTTLSAGAYAVAELSSANPGFLRKDDNGSPA |
| C687J50190_1020470 | C687J50190_10204701 | F050966 | MRENLMSGSRWQGMKTRHGDGTEALSEEMESNGSATPKSR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |