Sample 3300003278

3300003278: Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - U2-648F-DHS

Overview

Basic Information
IMG/M Taxon OID	3300003278 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111456 \| Gp0101256 \| Ga0057654
Sample Name	Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - U2-648F-DHS
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	184077440
Sequencing Scaffolds	34
Novel Protein Genes	39
Associated Families	38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae	2
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	2
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Nitrospirae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Down-Flow Hanging Sponge Reactor Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa
Type	Engineered
Taxonomy	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Down-Flow Hanging Sponge Reactor → Down-Flow Hanging Sponge Reactor Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	na → na → na

Location Information
Location	USA: University of Illionis
Coordinates	Lat. (^o)	40.114056	Long. (^o)	-88.226756	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002031	Metagenome / Metatranscriptome	601	Y
F002819	Metagenome / Metatranscriptome	528	Y
F003217	Metagenome / Metatranscriptome	500	Y
F007038	Metagenome / Metatranscriptome	359	Y
F007831	Metagenome / Metatranscriptome	344	Y
F008161	Metagenome / Metatranscriptome	338	Y
F009534	Metagenome / Metatranscriptome	316	Y
F013722	Metagenome	269	Y
F015834	Metagenome	251	Y
F015908	Metagenome / Metatranscriptome	251	Y
F016513	Metagenome / Metatranscriptome	246	Y
F017846	Metagenome / Metatranscriptome	238	Y
F022276	Metagenome / Metatranscriptome	215	Y
F023131	Metagenome / Metatranscriptome	211	Y
F023141	Metagenome	211	Y
F026423	Metagenome / Metatranscriptome	198	Y
F032328	Metagenome	180	Y
F034618	Metagenome	174	Y
F036309	Metagenome	170	Y
F054174	Metagenome / Metatranscriptome	140	Y
F054742	Metagenome	139	Y
F055512	Metagenome / Metatranscriptome	138	Y
F055517	Metagenome	138	Y
F058831	Metagenome	134	Y
F059099	Metagenome / Metatranscriptome	134	Y
F061688	Metagenome	131	Y
F063452	Metagenome	129	Y
F064866	Metagenome / Metatranscriptome	128	Y
F069784	Metagenome	123	N
F071487	Metagenome / Metatranscriptome	122	Y
F080069	Metagenome / Metatranscriptome	115	Y
F082505	Metagenome / Metatranscriptome	113	Y
F082835	Metagenome	113	Y
F089171	Metagenome / Metatranscriptome	109	Y
F091422	Metagenome / Metatranscriptome	107	Y
F100548	Metagenome / Metatranscriptome	102	Y
F101365	Metagenome	102	Y
F105448	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
U2draft_1000001	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	750416	Open in IMG/M
U2draft_1000005	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	585968	Open in IMG/M
U2draft_1000017	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	375930	Open in IMG/M
U2draft_1000019	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	354040	Open in IMG/M
U2draft_1000025	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	330307	Open in IMG/M
U2draft_1000034	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	258769	Open in IMG/M
U2draft_1000051	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	204713	Open in IMG/M
U2draft_1000070	All Organisms → cellular organisms → Bacteria	160886	Open in IMG/M
U2draft_1000071	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	160508	Open in IMG/M
U2draft_1000221	All Organisms → cellular organisms → Bacteria	80722	Open in IMG/M
U2draft_1000246	All Organisms → cellular organisms → Bacteria	76167	Open in IMG/M
U2draft_1000267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	73270	Open in IMG/M
U2draft_1000513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	46234	Open in IMG/M
U2draft_1000528	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	45520	Open in IMG/M
U2draft_1001047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	26272	Open in IMG/M
U2draft_1001232	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	22890	Open in IMG/M
U2draft_1001370	All Organisms → cellular organisms → Bacteria → Proteobacteria	21012	Open in IMG/M
U2draft_1001582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18944	Open in IMG/M
U2draft_1001729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae	17817	Open in IMG/M
U2draft_1001995	All Organisms → cellular organisms → Bacteria	15874	Open in IMG/M
U2draft_1002024	All Organisms → cellular organisms → Bacteria → Proteobacteria	15706	Open in IMG/M
U2draft_1002664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae	12705	Open in IMG/M
U2draft_1003164	All Organisms → cellular organisms → Bacteria	11106	Open in IMG/M
U2draft_1003737	All Organisms → cellular organisms → Bacteria → Proteobacteria	9749	Open in IMG/M
U2draft_1004135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8999	Open in IMG/M
U2draft_1004554	All Organisms → cellular organisms → Bacteria	8279	Open in IMG/M
U2draft_1009277	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	4335	Open in IMG/M
U2draft_1009326	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	4306	Open in IMG/M
U2draft_1009432	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	4245	Open in IMG/M
U2draft_1011021	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	3625	Open in IMG/M
U2draft_1012268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3222	Open in IMG/M
U2draft_1015081	All Organisms → cellular organisms → Bacteria	2592	Open in IMG/M
U2draft_1017303	All Organisms → cellular organisms → Bacteria	2199	Open in IMG/M
U2draft_1018107	All Organisms → cellular organisms → Bacteria → Nitrospirae	2131	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
U2draft_1000001	U2draft_1000001100	F036309	MKKSLTFTTLSTIFFLCFLTSVQAQSKVVKKGKTHDTIIVKHQPKPAKKPAPKPVAKPIVIPAVVKEIVLPTPEFINQPYYFNTDGNNLIKLENANALMVTKKKTLGLKGAKQFLSMDAASSKIRFVAKKDIVFFIKTSGDVIDLTSYIKLYEFVPVDQKREVTVTSKEGVLNNKDEAKGRLINFSVKMISKDNYQIQLPDQLAAGEYGFVWVKNMELKEFTVFAFGIDWKSSD*
U2draft_1000005	U2draft_100000598	F015834	MSQPTKIEREHYGKLGGRQITAIIWEELEGRALPVLLLTGWDRDGNAATITVLADSEGNGPGHLDHNL*
U2draft_1000017	U2draft_1000017135	F054742	MSRKILAVLAVASSIFMLSCERKPYVEHKLKFEKVADDCKEQQAYFRMNSNFGGERYEFEKCLPADFTDEQITSERQGDTVLVRFKTAAVNPANKVYHITLDIDSYPAYHFVTIDGDTYSISAAEK*
U2draft_1000017	U2draft_100001769	F101365	MPGSYAPGTINRNFEPVNVTAVPVIADLIYINKLLLELPDFFLDIYGTKLNEYPVQPTTMYLNKHLIYWINRYPKTMDLTLEDLMDALQYKRPGMTLECTRFRGGFEIFIPLEGVTYTNDDGMVRQHYFVINVDSIKNAIRIYVYKEEYLCIDFAQIRENFCDLIQAIKEYMKEHRTVDKLLSKIIS*
U2draft_1000017	U2draft_100001770	F064866	MKTSYSTFLLSVCMGALPFVAPAQMNDSHALAKYSYPIFAVADNQQYTGTAFFYRSGDTSFLVSNYHAIKGMSPLKKSITFNADTLFLKYPVKNSREFKIVAINISEEITGKTEIFSMVERIDLLKIPMKTPQDADILFINELIDEDYLNAEPEEVVVFGYPTNPGSVPAFYSRQQRLEGRINPNGFTDYDASLRLNFPATSDDARAILGGTARYYYFIKPYAAQGYSGAPVFGKFRNAENEVIYRFTGVIFAGQPTTRQTWAIKGAVALKYLQSEL*
U2draft_1000019	U2draft_100001932	F061688	MPYEFHDTTHVETRARERGFTVDQAMLTINDPASILKTPPRRGNHGGMLWLFFRVFEGRTLVVVAEIKLHECWIITGYWN*
U2draft_1000025	U2draft_1000025168	F002031	MSTKLISRKHVKDFALSMAKGRTHQFTRVGAEFFIKVEAHTKEFIRNYVRSLPSKGKTIT
U2draft_1000034	U2draft_1000034152	F002819	MPTTTCELAGTVYQLDYTKMSSKRGTYYFGKIHSSPVTGFAFTALTAGGHEFDDSREPFQRQEAIVSAIKNHESQ*
U2draft_1000034	U2draft_1000034160	F017846	MPVPFKIAITKEIIAHCKNCGTVSESDKIENSCAIAFALANIFPKVYVTNHCIFPFGIDGNKEKEIKIPLPLIAQQFIKLFDGFRLTPKLRLLLPDFEFIIDIPEEAIEHINIDEVRGLFKAGNDKERIATHHHHLRQLV*
U2draft_1000051	U2draft_1000051176	F013722	MKETFTRTYRGHQFDFKRVLSTSFDPWYHISVNLDNVDIKYRMHNRNKEAAWKITEQRLPRLLYSLEAEFNELIQLNEKPVDPYHRGMHYRAD*
U2draft_1000070	U2draft_100007087	F058831	MATLLNKRQVRTFTLAQAGQRAHRFTRVGGDFYVKCEANLREFIRNYVHRLPSKGRTIL*
U2draft_1000071	U2draft_100007156	F032328	MVATFQAIAQTGSFDVFTYQHPEFFTKSKLPSEVNLKMTDKDGSFCTITLHKSQSAKKNALTDVISQWNEQVVKRLAKANKKPARIMTEQLWDRWVSTLAIGNFYKNKKKAVVILNSFRKGKMTACVVFAMSDKTFKGVIENFSKNLHLIDQ*
U2draft_1000221	U2draft_100022137	F023141	MKELTAVLATARGSTKERAAARRAFLQRRAAIWADIQAGRFPAAYRDASGRKFVGASRRTAVRCDFLRANKIALGSKYRRDVIADQAQRDFLFYVLRDREAFPHRTGMKFYCCPTCTTKLLECVRARVFRYVDNAKWQAAIEAEPRKARNA*
U2draft_1000246	U2draft_100024646	F016513	MKINVDDWHFRDSEGETLLLDAYLDNGQHAMIEVNPMRWTQVVNGGIPEIIVFCELPGEKLVEETCPARWAARPPDRTCSWSNVQMPMALMQQIKDRLGMAQAH*
U2draft_1000267	U2draft_100026728	F089171	MNTKNNPLGTQEHEILRAIARTAATPALRVPLSSTQRLRFEMLGLIEDRADGIRLTERGRALAAAPSEMPQATPDPQQHAPTPRDRRGRRLGLRRRSPF*
U2draft_1000513	U2draft_100051314	F054174	MAWTDLIAGCFGFGTAPFASNRQDEDIAIQAIAAAKAEGATRYEFAQLIATYPRKYIKSEQVLRDRLREDAARLEKLWETPRFRE*
U2draft_1000528	U2draft_10005288	F082835	MKAILALFIACLLLTACSSPKKTVTKNDAPKVSREDMLAGGTSFSNPVVIMVQKERAGLDEEYKWLANNYPGYSLIRRRHVSRAAKQYDIVRIKTKQGHLKDIYFDSTRYWGKN*
U2draft_1001047	U2draft_100104724	F015908	MRYVTVAGVLAVLATQAQAESKTYRTQLIPEKSIQACSGWGQTYTVDVSDGVLTLGVNYARRLFSGPVKSDGKIAASYRDPSGGILNFIGHGNGEYELSNSTNSCYYRFVPTVGRPPWNS
U2draft_1001232	U2draft_100123212	F023131	MHYIAIANFPKDSKMLSELASRRRSYRYPASFSNVQSYLDVQGGRSIIHFETEDAKSILRYTADWPEVAFDLFPVVPSDAGWETYMAGRVGPASVVAS*
U2draft_1001370	U2draft_100137014	F063452	VNVDPIPQNLVAVHDLLTETITVANEPAVRYSWGVAIFPRTGRFDAPVFGVVTCGGESTTLTYRLLQSLMDLPVYVSGRVPATIRDGMAFGPRRSAPPPALMDQPVLHIMLTCCIGSTTDDLDRTMPLESTVFAGDLKAPVILLTEGRPDGWPK*
U2draft_1001582	U2draft_100158217	F091422	MVMVHEDARALLRSLGGERVHSHYVQGASEAMMASVRLEHAVSEQDYADVHRLATNELGPGLASLDEIKRVDSLTGASIWVIRRKGEVTGFLAPLALTAAGVAALVDNTFDAANIDEKWVARIGEPLAGFYCWCYAGKDQVSRGALVLGLRTLIDKHFTDLPFFGRDSTEAGARIMRHLGFFPFADTPHLFWRCASVMEMAA*
U2draft_1001729	U2draft_10017299	F082505	MRGRIMWPFDSRKQKAVVVFHIDNEGRARGAWFRGDADVLIIDERDPFNRVHLMDQETNVDELRRKIGRHPLGRMLNEDCKASALPVLNLHWRTDGKAAAH*
U2draft_1001995	U2draft_100199514	F055517	MSSQMQARLKPEHTLRYPRLSANMWYDVSPIFPGVTTRRVDIFGRRITRIRTARDYETVQAAHFEFRERPVEEEIRQPAVAM*
U2draft_1002024	U2draft_10020247	F034618	MAVRKRSYSLDERAAEYLDRAAVRAKRSASVVLSDLVAEAARQEARDRALGELGAGVEVSDKEVERWLRQLGAA*
U2draft_1002664	U2draft_10026648	F080069	MRPGGAKSGPTLRRMAAIFGCAVMLSGMTPAVADDIAGDWLFDTSKFAGNDCQISGRITFKPTAVKNTYTCVFENEQICGPLNGNLYIRVRQTCTAQRIGKQVAIKSQVDKVLERRPAIPFPEDYYLADNFIVQLSADKAEMNGSHYDEQRQLKARFWRDVELIS*
U2draft_1003079	U2draft_10030798	F105448	MAIRIGATVMLPGYAPYPRYGTVDKIQDDGGVLVRNVQCGDPRCAAEHVHGDVTWSSHELEAANAYQPRAAWESGRKSSPNAPVG*
U2draft_1003164	U2draft_100316412	F059099	MSQDDHDSVPLEPQEALRLLDDARGRLRTAIWALHGMHQDMSALTVDDISDIEHLLTEILENEITPCYETMSQALGAGPGGAVTTH*
U2draft_1003737	U2draft_10037378	F069784	MSKTANRQPLTVRLDPESKRLFAEEAEKCGLEPGVAARQILELYVQRLRESGDYIQTLSDFSQALKARTA*
U2draft_1004135	U2draft_10041353	F100548	MTEPPTPHHFQTNQPRELLACVEFAAAQSGHASDDHGCWRWLIISMTLAVQNACLCALDHGDEFGTKGMTRQDAREVKRWTKNGRRGPEPLAVREPRIVSPLELLRRVGDPFFLRPPFQLPLNRQISEAFDDLVDLRNTFLHFSEDGWTIDLREIPPLILNACDVIRHLSVTQPIYLRHAGPNHRERVAAALDTIEAAMEHYPDEQPAGDP*
U2draft_1004554	U2draft_10045544	F054174	MAWMDLIAGCFGFGTAPFATNRLDEDVAMQAIAAAKAEGVTRHEFAQLIAAYPRKYIKSEHVLRDRLREDAARLEKLWATPRFRD*
U2draft_1004554	U2draft_10045546	F071487	MSQSDVVPLVLPIAIFACGAALFSHRFYLVYRGWSLREFVYKQHLPGILGTALMLFAILFASSLGWPHAIAVVLGGSAVSYLYVYVFRMWAEAALLGPALAVLLIFAMPSSS*
U2draft_1009277	U2draft_10092775	F026423	MKPATNLVKYLDPLLLTSLLLSAGCATLSEPQPTTVGSHCRITWDKPNDSKITGYQLIMIDKSKEIIKAEKFIPADTTTVSCKDAGADHAGLWGVTVRSCYDKSTCGAPTETAYIHISAE
U2draft_1009326	U2draft_10093262	F055512	MKEMNHIQSVTFPIMRQRHQKVGAMPVLRDLAGPVCAHCGSLRYFLVFRVSRDGWNGILVGRCRRCQNARELTASDIEEGCHA*
U2draft_1009432	U2draft_10094326	F009534	MEIVYIVIGIFLVWLVRTLHNIRIRDEEEASKKNAFDKWAKEQQDPHIVSMVQNFMREGRFKTWEEAVTHAEQTLNRSSSKPPSDSQANDKEETS*
U2draft_1011021	U2draft_10110212	F022276	MGGFLALALAIGLVFGARKLCDLIRAPLWFAKFLFICAFLILTYFLAEEIVPESKKPWGIWIALLGAATGIIPVGFIVFKHIGDDDGNASASSRSRSE*
U2draft_1012268	U2draft_10122683	F007038	MKPRRIFVDTEWTAPPWSPHAELMWVGLADEAGRAWHGISSEVEIDPSTNAFMSGVFRYITPEEPRLSRSQLAADVRRFCGEVDEFWAWVPTPERFAESSGLGAQARKVYERCWDVDLQMLQALVSPWPPAWPTRLYDLNSAAVAAGVEIPPRAPDHLHPRVHALWNRALFERIRAAGVPDASAAYARGSS*
U2draft_1015081	U2draft_10150814	F008161	MKTSQRDALLGTITWWGFHALLAWMGAWHFISRDFGDGSFLASDLFAGSLLVSTGLSLLRLSVGCHLLRFVALLGILLVVYRMWEGKAEWGNLTDVAIWAYTFYSFGPSSWRYSLYSPLGVFGKLKT*
U2draft_1017303	U2draft_10173031	F003217	MAESEFIVQKVEWFQFRDADGSAFFVMVSSLPNGFFTAVPCQIPTTLANHSLMALAATPDEALAQLQANLGGKTPEQ
U2draft_1018107	U2draft_10181073	F007831	MNIVITIMFLLPLALMTQYLYVSGVFTNRSAFQVTFYILLSFFLLLIGIGGIQLSSLGYDLPATAPLSLTEVLPQP*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003278: Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - U2-648F-DHS

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences