| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003251 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111492 | Gp0103163 | Ga0057483 |
| Sample Name | Ircinia variabilis associated microbial communities from Achziv, Israel - Sample 142 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 60643956 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Ircinia Variabilis Associated Microbial Communities From Achziv, Israel |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Ircinia Variabilis Associated → Ircinia Variabilis Associated Microbial Communities From Achziv, Israel |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal corpus |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Achziv, Israel | |||||||
| Coordinates | Lat. (o) | 33.01 | Long. (o) | 35.04 | Alt. (m) | N/A | Depth (m) | 5 to 9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014255 | Metagenome | 264 | Y |
| F025263 | Metagenome / Metatranscriptome | 202 | Y |
| F030805 | Metagenome / Metatranscriptome | 184 | Y |
| F038905 | Metagenome / Metatranscriptome | 165 | N |
| F045799 | Metagenome / Metatranscriptome | 152 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| IrcVar142_1001666 | Not Available | 8179 | Open in IMG/M |
| IrcVar142_1001803 | Not Available | 7313 | Open in IMG/M |
| IrcVar142_1003860 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 3118 | Open in IMG/M |
| IrcVar142_1004202 | All Organisms → cellular organisms → Bacteria | 2907 | Open in IMG/M |
| IrcVar142_1005394 | Not Available | 2384 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| IrcVar142_1001666 | IrcVar142_100166613 | F030805 | MEKKIVGAAGTLLLGVSAWLISTVYSIQVDTAIIKDKIEKVYEDNCPYCVHAAHSSIANHPLLGPTIKHSHQHIGREIVKTND* |
| IrcVar142_1001803 | IrcVar142_10018032 | F045799 | MKKLFLALLFNLITLTAFSQDNFAGWWESKTSKYITMIYVGDYGVSQVVNYNPWNEDVIEERIIRRNKYTFVTHLFNKRNGYSVKIKYKLKDKNNLICKFTGDLKRTVHLTRYKFDLNNKLKT* |
| IrcVar142_1003860 | IrcVar142_10038602 | F025263 | MAINPNQLHVAKIYPGNYTNVLRYWHEEKTVQYDNANGVSQNLANQPIGGPVGVVFRPGWIAQQAVGYVDLSFQALGTVNQLSYYTQPYGSGQPFSSASVIIPSPDFHKDVRADISNGIGAPAGAFVYRASLRVDGGDVVSSGIAGGSATPKISLVPAVGEGLLDDGTVVSGQFGVSVTGSDSRIANGSTASVNIIDSSSLAALSTETQWQLFATTDLGGVAASGLAQGSGVYDPRASANKLAGDDKALAICEVCWIIPDEPPERQDVALQPDGLVESSVYTSTSPS* |
| IrcVar142_1004202 | IrcVar142_10042022 | F014255 | MAEATFNRELGEAPAGITRFGQFRNDDGLNVTVNSFRSFAADGRYGLADVYEITYGSTGTATVLLNAEAFGISGIAVYKADGTLAGEATAPKTTRRTGIGVGYSVTSGDTATVYVLRKGRSESEYRLTAFVL* |
| IrcVar142_1005394 | IrcVar142_10053944 | F038905 | MTTFGSSQDGVATNVTTETKTIQTGRTRVYGVHVSGPNVAGVLDIKDGSTSKVKLNKAAHVHDMTINFPVPILFKTNLNTAFTTEQITAITVFHSGGNNS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |