| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003105 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063260 | Gp0052157 | Ga0051101 |
| Sample Name | Fresh water viral communities from Lake Needwood, MD |
| Sequencing Status | Finished |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 3617333 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 2 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Fresh Water Viral Communities From Lake Needwood, Md |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Fresh Water → Fresh Water Viral Communities From Lake Needwood, Md |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Lake Needwood, Maryland, USA | |||||||
| Coordinates | Lat. (o) | 39.121 | Long. (o) | -77.129 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002343 | Metagenome / Metatranscriptome | 568 | Y |
| F032996 | Metagenome | 178 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0051101_100241 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2549 | Open in IMG/M |
| Ga0051101_113333 | Not Available | 669 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0051101_100241 | Ga0051101_1002415 | F032996 | MINEKTKGGSGKTYSVFEITSKTTGRKHFMVSSRYTLENILSGIRTYVDSKTVGGGAKELAQDIYNAGKNYEEDFTVKEVGKGMSREIAERRRAELVTKSGEVYNQEIGVT* |
| Ga0051101_113333 | Ga0051101_1133333 | F002343 | VGDAVNEIDLKVTLEEAVGIVNLLGSLPTAQGAHPLWLKLKAQVEPLIPKPDEVQQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |