NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003073

3300003073: Marine surface microbial communities Puget Sound, Washington, USA



Overview

Basic Information
IMG/M Taxon OID3300003073 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111473 | Gp0097851 | Ga0052263
Sample NameMarine surface microbial communities Puget Sound, Washington, USA
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Washington
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size2059964
Sequencing Scaffolds3
Novel Protein Genes12
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Surface Seawater At Puget Sound
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Surface Seawater At Puget Sound

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine photic zone → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBeach at Golden Gardens Park, Seattle, WA, USA
CoordinatesLat. (o)47.6906558Long. (o)-122.404411Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008747Metagenome / Metatranscriptome328Y
F032291Metagenome / Metatranscriptome180Y
F103296Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0052263_10085All Organisms → cellular organisms → Archaea592Open in IMG/M
Ga0052263_10086All Organisms → cellular organisms → Archaea2646Open in IMG/M
Ga0052263_10087All Organisms → cellular organisms → Archaea975Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0052263_10085Ga0052263_100852F032291VTAVGVPLIAPVEASKDKPAGSDGEIDQLVIVPPFTVGVAVVMAVPLVKLNVLGLYVRDEGATSFTTIVTVTVSLPPVL
Ga0052263_10086Ga0052263_100861F008747VTSVGVPLMVPVEESIANPAGRDGEIDQEVTGPPLVVGVTVVMAVPFVSVNELGL*
Ga0052263_10086Ga0052263_1008610F032291VEESKIKPVGSVGEADQEVTVPPVIDGVTVVMAVPFVNVNEFGLYAKEDGVTSLTT
Ga0052263_10086Ga0052263_100862F008747MAPVDESKDKPTGSVGETDHEVIVPPLEVGVAVVIVVPFVNENED*
Ga0052263_10086Ga0052263_100863F103296MVRTAVSLPPVFSAVTVYEADEVTAVGVPLIAPVDESKDNPAGSEGETDQDVMVPPLADGVVVVIAVPFVRVKLFGL*
Ga0052263_10086Ga0052263_100866F103296MSFTTMVTVAVSLPPVLLAVMVYKVDEVTAVGVPEIAPVVESKAKPAGRVGETDHEVIVPPLTVGVTVVMPVPFVSVTSSGCKQAMMERHR*
Ga0052263_10086Ga0052263_100867F032291VIAVGVPDIAPVEASKDSPAGSDGDTDQEVIVPPFTVGVTVVIAVPLVSVNELGLYVSEDGATSLTTMVTVTESLPPVLLPVTV*
Ga0052263_10086Ga0052263_100868F008747VTVVGVPLMAPVDESNAKPAGSDGETDHDVIVPPLEVGVAVVMVVPFVKENEL*
Ga0052263_10087Ga0052263_100871F008747LQRKSPLFGVPLIAPVDESKDKPAGREGETDHDVMVPPLTVGVAVVIAVP
Ga0052263_10087Ga0052263_100872F032291VTAVGVPLIAPVVESKDNPAGSDAETVQEVIGPPLTVGVAVVIEVPFVNVNELGLYERPDGATSLTTIVTVAVSLPPVLPAVTV*
Ga0052263_10087Ga0052263_100873F008747VTAVGVPLIAPVVESKDKPAGSVGETDHDVIVPPFAVGVIVVIAVPLVSEKEL*
Ga0052263_10087Ga0052263_100874F103296LLAVIVYVAEEVTADGVPPMAPVEASKDKPAGSDGNTDQEVIVPPFTVGVTVVIAVSFVSVNELGL*
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