NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002880

3300002880: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_150m_B (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300002880 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046785 | Gp0055390 | Ga0005260
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_150m_B (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size33143928
Sequencing Scaffolds4
Novel Protein Genes5
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
Not Available2
All Organisms → cellular organisms → Archaea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBritish Columbia, Canada
CoordinatesLat. (o)48.7299Long. (o)-123.5699Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006959Metagenome / Metatranscriptome361Y
F029271Metagenome / Metatranscriptome189N
F075397Metagenome / Metatranscriptome119N
F102126Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0005260J43197_1007337All Organisms → cellular organisms → Bacteria2599Open in IMG/M
Ga0005260J43197_1014525Not Available1022Open in IMG/M
Ga0005260J43197_1017796Not Available910Open in IMG/M
Ga0005260J43197_1022724All Organisms → cellular organisms → Archaea737Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0005260J43197_1007337Ga0005260J43197_10073371F075397IYMKYWHKRVDVVSFFDLDQENQDIELKDDDNADEFAFLIAENGEYWNLDLFMRTESGRYDGVMGLTNTSAIGIVLSCSGESAVIQCFG*
Ga0005260J43197_1014525Ga0005260J43197_10145253F029271MSKLSDLQEIKKLLDVDFRRHQFLDNQYNNSPSFNYDAAKSYVANIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQKFGAQK*
Ga0005260J43197_1014525Ga0005260J43197_10145254F075397MKYWHKRVEVVSFFDLDKESQAAELKDDDNAEELAFLIAENGDEYWNLDLFMRTESNGRYDGVMGLTNTSAIGIVLSCSGK
Ga0005260J43197_1017796Ga0005260J43197_10177961F102126MGKKGKDIQLGKDAERFVNDPLYKTAFAETKEELIKMLLQTKISEETERDRIYITIKALGLIDEHIQSVINTGKLAEGQQEFYSEHY*
Ga0005260J43197_1022724Ga0005260J43197_10227243F006959MYFETQVIFTEEIPTKNGVREKKTRRAFLVECDSVSVAEAKVNETLKDSPYPFEVKVAKESKIVE
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